miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 266 0.67 0.559795
Target:  5'- cGC-GCGcGCGGacgcgaGGaCGGCGGCCcUGGCg -3'
miRNA:   3'- -CGuCGC-CGCCg-----CC-GUCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 564 0.69 0.424986
Target:  5'- gGC-GCGGCGGUGGCAGgucucguuuacccuCGGuccguUCGUGGCc -3'
miRNA:   3'- -CGuCGCCGCCGCCGUC--------------GCU-----GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 861 0.69 0.444074
Target:  5'- cCAGCGcGCgcccgcgaGGCGGuCGGCGugCGCgcgGGCc -3'
miRNA:   3'- cGUCGC-CG--------CCGCC-GUCGCugGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 2712 0.68 0.469675
Target:  5'- aGgGGCGGUcuggGGCGGUcuuuGGCGACCGagacCGGg -3'
miRNA:   3'- -CgUCGCCG----CCGCCG----UCGCUGGC----GCCg -5'
10887 3' -64.7 NC_002794.1 + 3763 0.66 0.569115
Target:  5'- gGCGG-GGCGGgGG-AGUGACUcaGCGGg -3'
miRNA:   3'- -CGUCgCCGCCgCCgUCGCUGG--CGCCg -5'
10887 3' -64.7 NC_002794.1 + 4246 0.67 0.522082
Target:  5'- cGguGCGGCucucGGUGGUcucgaucGGUGACgGUGGUc -3'
miRNA:   3'- -CguCGCCG----CCGCCG-------UCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 8118 0.76 0.168326
Target:  5'- -gAGCgGGCGGCGGCcuccucGGUGACCGgcgaCGGCa -3'
miRNA:   3'- cgUCG-CCGCCGCCG------UCGCUGGC----GCCG- -5'
10887 3' -64.7 NC_002794.1 + 9060 0.7 0.386781
Target:  5'- -aGGCGGUGGCGcaGGCGAUCcgagacuuggagaGCGGCg -3'
miRNA:   3'- cgUCGCCGCCGCcgUCGCUGG-------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 9314 0.67 0.517547
Target:  5'- aCGGCGG-GaaagaggaaggaaacGCGGguGCGugCGcCGGCa -3'
miRNA:   3'- cGUCGCCgC---------------CGCCguCGCugGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 11642 0.66 0.597282
Target:  5'- aCAGCGaCgGGCGGCcGaCGA-CGCGGCc -3'
miRNA:   3'- cGUCGCcG-CCGCCGuC-GCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 12227 0.84 0.043742
Target:  5'- uCGGCGGCGcCGGCGGCGccguCCGCGGCg -3'
miRNA:   3'- cGUCGCCGCcGCCGUCGCu---GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 13265 0.68 0.468809
Target:  5'- -gGGCuGUGGUGG-AGCGGCCGCuguugacGGCg -3'
miRNA:   3'- cgUCGcCGCCGCCgUCGCUGGCG-------CCG- -5'
10887 3' -64.7 NC_002794.1 + 13340 0.66 0.597282
Target:  5'- cCGGuCGGgGGUGGCGGCGccccUCGCccgGGCc -3'
miRNA:   3'- cGUC-GCCgCCGCCGUCGCu---GGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 14495 0.81 0.070353
Target:  5'- --cGCGGCGGCGGCccGCGcUCGCGGCg -3'
miRNA:   3'- cguCGCCGCCGCCGu-CGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 14564 0.69 0.402424
Target:  5'- cGCGGgaGGCGaGcCGGCcgaccgaAGCgGGCCGUGGCg -3'
miRNA:   3'- -CGUCg-CCGC-C-GCCG-------UCG-CUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 14679 0.74 0.219007
Target:  5'- cGCGGCGGCGGUcgcgcugcuccugacGGCguggggAGCGcuGCuCGCGGCu -3'
miRNA:   3'- -CGUCGCCGCCG---------------CCG------UCGC--UG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 16276 0.68 0.504935
Target:  5'- cGCcGCGccccuguUGGCGGagucuagccuGGCGGCCGCGGCc -3'
miRNA:   3'- -CGuCGCc------GCCGCCg---------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 16851 0.72 0.30231
Target:  5'- aGCAGCaGCaGCaGCAGCaaccaccgccGCCGCGGCa -3'
miRNA:   3'- -CGUCGcCGcCGcCGUCGc---------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 17138 0.7 0.395335
Target:  5'- cCGGCGaaaCGGCGGUAGCGcCCGUGacGCu -3'
miRNA:   3'- cGUCGCc--GCCGCCGUCGCuGGCGC--CG- -5'
10887 3' -64.7 NC_002794.1 + 17627 0.68 0.469675
Target:  5'- cGCcGCGGCGaGCGaucCcGCcGCCGCGGCc -3'
miRNA:   3'- -CGuCGCCGC-CGCc--GuCGcUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.