miRNA display CGI


Results 21 - 40 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 18244 0.68 0.469675
Target:  5'- -aAGC-GCGcGCGGCcgaccGGCGACCGCGagauGCg -3'
miRNA:   3'- cgUCGcCGC-CGCCG-----UCGCUGGCGC----CG- -5'
10887 3' -64.7 NC_002794.1 + 18550 0.7 0.357452
Target:  5'- aGCA-CGGCGGCGaCcGCGACCGUGcccGCg -3'
miRNA:   3'- -CGUcGCCGCCGCcGuCGCUGGCGC---CG- -5'
10887 3' -64.7 NC_002794.1 + 18703 0.7 0.387553
Target:  5'- aCGGCGGCGGCGGUccGGaCGucggaGCCGaCGaGCc -3'
miRNA:   3'- cGUCGCCGCCGCCG--UC-GC-----UGGC-GC-CG- -5'
10887 3' -64.7 NC_002794.1 + 19462 0.85 0.038562
Target:  5'- aGCGGCGGCGGCGGCGG-GAcCCGcCGGUc -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCgCU-GGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 19527 0.66 0.606723
Target:  5'- aGCGcCGGC-GCGGC-GCGGCCcGcCGGUg -3'
miRNA:   3'- -CGUcGCCGcCGCCGuCGCUGG-C-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 20391 0.66 0.578473
Target:  5'- --cGCGGU-GCGGCGG-GACCGgGaGCg -3'
miRNA:   3'- cguCGCCGcCGCCGUCgCUGGCgC-CG- -5'
10887 3' -64.7 NC_002794.1 + 20982 1.12 0.000423
Target:  5'- gGCAGCGGCGGCGGCAGCGACCGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21373 0.71 0.326965
Target:  5'- --cGCGGCGGCGGCcGCcGucucuuccucggacACCGcCGGCu -3'
miRNA:   3'- cguCGCCGCCGCCGuCG-C--------------UGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 21473 0.68 0.452521
Target:  5'- aCGGCaaCGGUGGCAGCGGCUuCGGa -3'
miRNA:   3'- cGUCGccGCCGCCGUCGCUGGcGCCg -5'
10887 3' -64.7 NC_002794.1 + 21657 0.9 0.016674
Target:  5'- -aAGCGGCGGCGGUGGCGGCgGCGGUa -3'
miRNA:   3'- cgUCGCCGCCGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21879 0.67 0.559795
Target:  5'- -aGGcCGGCcGCGG-GGUGuCCGCGGCc -3'
miRNA:   3'- cgUC-GCCGcCGCCgUCGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21909 0.83 0.050861
Target:  5'- uCGGUGGUGGCGGCGGagaCGACgGCGGCg -3'
miRNA:   3'- cGUCGCCGCCGCCGUC---GCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21940 0.66 0.616179
Target:  5'- cGCGGCgcucgucgaaGGCcGuCGGCcGCucCCGCGGCg -3'
miRNA:   3'- -CGUCG----------CCGcC-GCCGuCGcuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 22903 0.83 0.0496
Target:  5'- ---uUGGUGGaCGGCGGCGACCGCGGCc -3'
miRNA:   3'- cgucGCCGCC-GCCGUCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 23917 0.74 0.212142
Target:  5'- aGCAGCGuG-GGCGaGCgAGCGauccgagcccgGCCGCGGCg -3'
miRNA:   3'- -CGUCGC-CgCCGC-CG-UCGC-----------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 26077 0.7 0.395335
Target:  5'- cGCAcGCcacGCGG-GGCAGCG-CCGaCGGCc -3'
miRNA:   3'- -CGU-CGc--CGCCgCCGUCGCuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 29211 0.75 0.180544
Target:  5'- cCGGCGGuCGGCGGCcGuCGGCCGcCGaGCa -3'
miRNA:   3'- cGUCGCC-GCCGCCGuC-GCUGGC-GC-CG- -5'
10887 3' -64.7 NC_002794.1 + 31053 0.76 0.148541
Target:  5'- gGCAGCGGCacGGCGGcCAGCucgcgcagcacgucGAgCGUGGCg -3'
miRNA:   3'- -CGUCGCCG--CCGCC-GUCG--------------CUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 32302 0.82 0.060595
Target:  5'- cGCcGCGGCGGCcGCGcCGGCCGCGGCc -3'
miRNA:   3'- -CGuCGCCGCCGcCGUcGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 32577 0.73 0.237532
Target:  5'- cGCGcGCGGCGGUgccggGGCcGgGGCCGgGGCc -3'
miRNA:   3'- -CGU-CGCCGCCG-----CCGuCgCUGGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.