miRNA display CGI


Results 41 - 60 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 32836 0.73 0.259636
Target:  5'- cGCGGcCGGCucauCGGUAGCGGCaGCGGCc -3'
miRNA:   3'- -CGUC-GCCGcc--GCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 32870 0.93 0.010523
Target:  5'- cCGGCgGGCGGCGGCGGCGGCgGCGGCa -3'
miRNA:   3'- cGUCG-CCGCCGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 32921 0.72 0.283389
Target:  5'- gGCAGCaGGuCGGCGGgaAGCGcuCgGCGGCc -3'
miRNA:   3'- -CGUCG-CC-GCCGCCg-UCGCu-GgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 34083 0.67 0.52299
Target:  5'- cCGGCGGCcgGGCagccgucgGGCGGCccgGACCGCGa- -3'
miRNA:   3'- cGUCGCCG--CCG--------CCGUCG---CUGGCGCcg -5'
10887 3' -64.7 NC_002794.1 + 34276 0.71 0.329029
Target:  5'- cGCAgGCGGCcaGCGcCAGCGACCGgGaGCu -3'
miRNA:   3'- -CGU-CGCCGc-CGCcGUCGCUGGCgC-CG- -5'
10887 3' -64.7 NC_002794.1 + 34747 0.67 0.52299
Target:  5'- aGCGcGCGaCGGC-GCGGUGGgaCGCGGCa -3'
miRNA:   3'- -CGU-CGCcGCCGcCGUCGCUg-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 36006 0.67 0.541288
Target:  5'- cGCGG-GGCucgGGCGGCGGaauccgccgucCGGCC-CGGCc -3'
miRNA:   3'- -CGUCgCCG---CCGCCGUC-----------GCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 36352 0.71 0.308829
Target:  5'- cCGGCGugcGCGGCcaccGGguGCGcgcCCGCGGCg -3'
miRNA:   3'- cGUCGC---CGCCG----CCguCGCu--GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 36413 0.69 0.444074
Target:  5'- cGUAGCGGCGGCuGaugaAGCGGaaGaccaGGCg -3'
miRNA:   3'- -CGUCGCCGCCGcCg---UCGCUggCg---CCG- -5'
10887 3' -64.7 NC_002794.1 + 36914 0.76 0.168326
Target:  5'- --cGCGGCGcCGGCcccGCGACCGCGGa -3'
miRNA:   3'- cguCGCCGCcGCCGu--CGCUGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 36955 0.75 0.172314
Target:  5'- cGC-GCGGCGGCaGGCAGUcgcgcaggagGAUCGCGcGCa -3'
miRNA:   3'- -CGuCGCCGCCG-CCGUCG----------CUGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 37330 0.67 0.532111
Target:  5'- aGCGGUGGggcccgGGCGGCAGCaGGUCG-GGCc -3'
miRNA:   3'- -CGUCGCCg-----CCGCCGUCG-CUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 37734 0.86 0.033135
Target:  5'- aGCGGCGGCgccgccGGCGGCGGCG-CgGCGGCg -3'
miRNA:   3'- -CGUCGCCG------CCGCCGUCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 37767 0.66 0.616179
Target:  5'- cCGGCGG-GaGCGGCcgucgucGuCGGCCGCaGGCg -3'
miRNA:   3'- cGUCGCCgC-CGCCGu------C-GCUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 37830 0.7 0.357452
Target:  5'- aCGGCGaCGGCGGCuaacguGGCGACCa-GGCu -3'
miRNA:   3'- cGUCGCcGCCGCCG------UCGCUGGcgCCG- -5'
10887 3' -64.7 NC_002794.1 + 37893 0.94 0.008572
Target:  5'- gGCGGUGGCGGCGGCAGCGGCuCGcCGGCc -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGCUG-GC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 37965 0.68 0.478376
Target:  5'- uCGGCGGCucGUGGUacgAGcCGAUCGCGGUc -3'
miRNA:   3'- cGUCGCCGc-CGCCG---UC-GCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 38150 0.68 0.478376
Target:  5'- aGCAGgaGGUaGGCGaGCAgGCGGCUGCgcucGGCg -3'
miRNA:   3'- -CGUCg-CCG-CCGC-CGU-CGCUGGCG----CCG- -5'
10887 3' -64.7 NC_002794.1 + 38436 0.82 0.062747
Target:  5'- -uGGCGGCGGgccggacugaggagcCGGC-GCGGCCGCGGCg -3'
miRNA:   3'- cgUCGCCGCC---------------GCCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 38496 0.7 0.395335
Target:  5'- aGC-GCGGCGGCGcCGGUcGCCGCcGCc -3'
miRNA:   3'- -CGuCGCCGCCGCcGUCGcUGGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.