miRNA display CGI


Results 61 - 80 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 40545 0.66 0.594454
Target:  5'- -aGGgGGcCGGCGGCAugagcuucucguucGCGccguccugGCCGCGGg -3'
miRNA:   3'- cgUCgCC-GCCGCCGU--------------CGC--------UGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 41287 0.67 0.532111
Target:  5'- ---aCGGCGGCGGCuccgacGCGgGCCGCGuGg -3'
miRNA:   3'- cgucGCCGCCGCCGu-----CGC-UGGCGC-Cg -5'
10887 3' -64.7 NC_002794.1 + 42573 0.7 0.372296
Target:  5'- cGCGGCGGacccGCGGaCGGaggaGGgCGCGGCg -3'
miRNA:   3'- -CGUCGCCgc--CGCC-GUCg---CUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 42641 0.67 0.513931
Target:  5'- aCAGCGGagucGCGGCcgaagccgacGGCG-CCGcCGGCa -3'
miRNA:   3'- cGUCGCCgc--CGCCG----------UCGCuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 44171 0.68 0.496009
Target:  5'- gGC-GCGaGCGGCGGCucgucgacuccgGGCGaaGCCG-GGCc -3'
miRNA:   3'- -CGuCGC-CGCCGCCG------------UCGC--UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 44245 0.67 0.513931
Target:  5'- -gGGCGGCucggugccgGGCGGCu-CGGCCGcCGGg -3'
miRNA:   3'- cgUCGCCG---------CCGCCGucGCUGGC-GCCg -5'
10887 3' -64.7 NC_002794.1 + 44301 0.73 0.259636
Target:  5'- -gGGcCGGCgaGGCGGgGaGCGACCGCGaGCg -3'
miRNA:   3'- cgUC-GCCG--CCGCCgU-CGCUGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 44330 0.71 0.329029
Target:  5'- cGCGGCGGCgaagaagacGGCGcCGGCGAgaccgagagCGCGGCg -3'
miRNA:   3'- -CGUCGCCG---------CCGCcGUCGCUg--------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 44555 0.66 0.575662
Target:  5'- cCGGCGGCGGCGcccguugacgucacGCGG-GACCGa-GCc -3'
miRNA:   3'- cGUCGCCGCCGC--------------CGUCgCUGGCgcCG- -5'
10887 3' -64.7 NC_002794.1 + 44678 0.69 0.406397
Target:  5'- cGCAGCGccauCGuccagacccaccgccGCccGGCcGCGACCGCGGCg -3'
miRNA:   3'- -CGUCGCc---GC---------------CG--CCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 46314 0.76 0.146092
Target:  5'- aGC-GCGGCGGCGaCGGCGccgucGCCGCGGa -3'
miRNA:   3'- -CGuCGCCGCCGCcGUCGC-----UGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 46767 0.7 0.379873
Target:  5'- aCGGCGacuucgaccccaGCGGCGGCGGCGACaaaaGCa-- -3'
miRNA:   3'- cGUCGC------------CGCCGCCGUCGCUGg---CGccg -5'
10887 3' -64.7 NC_002794.1 + 47342 0.67 0.548667
Target:  5'- --cGCGGCGGCGGCcuccggacguucGCGcucaaGCCGaGGCc -3'
miRNA:   3'- cguCGCCGCCGCCGu-----------CGC-----UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 47735 0.72 0.293361
Target:  5'- aGCAGCccgccggguccacGUGGCGGCcGUGGUCGCGGCa -3'
miRNA:   3'- -CGUCGc------------CGCCGCCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 47849 0.69 0.435715
Target:  5'- cGCAGCaGGCGGC-GUAGaGAUCGUaGGCc -3'
miRNA:   3'- -CGUCG-CCGCCGcCGUCgCUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 47953 0.7 0.372296
Target:  5'- cGCGuccCGGCGcCGGCugGGCGACCGCcGCg -3'
miRNA:   3'- -CGUc--GCCGCcGCCG--UCGCUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 48160 0.68 0.496009
Target:  5'- gGCAGCGGCGccgcuucacgccGCuGCAGCGgaACUGCGcCa -3'
miRNA:   3'- -CGUCGCCGC------------CGcCGUCGC--UGGCGCcG- -5'
10887 3' -64.7 NC_002794.1 + 48223 0.66 0.606723
Target:  5'- gGCAGagcaGGCGGCcGCcaucguuCGGCCGCaGCa -3'
miRNA:   3'- -CGUCg---CCGCCGcCGuc-----GCUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 48433 0.72 0.271303
Target:  5'- -gGGCGGaGGUGGCGGCGGCCauCGGg -3'
miRNA:   3'- cgUCGCCgCCGCCGUCGCUGGc-GCCg -5'
10887 3' -64.7 NC_002794.1 + 48879 0.72 0.295897
Target:  5'- gGCGGCcaGGUGGCaGGcCAGCGuuGCCGCaGCu -3'
miRNA:   3'- -CGUCG--CCGCCG-CC-GUCGC--UGGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.