miRNA display CGI


Results 81 - 100 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 48958 0.68 0.461056
Target:  5'- cGCAGa--CGGCGaGCAGacACCGCGGCc -3'
miRNA:   3'- -CGUCgccGCCGC-CGUCgcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49016 0.73 0.237532
Target:  5'- cGCcGCGGCGGCcGCGGCGucguccGgCGCGGUc -3'
miRNA:   3'- -CGuCGCCGCCGcCGUCGC------UgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49051 0.66 0.597282
Target:  5'- uCAGCGuccagGGCGcGCAGCacGACuCGCGGUa -3'
miRNA:   3'- cGUCGCcg---CCGC-CGUCG--CUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49412 0.89 0.018466
Target:  5'- gGCGGCcGCGGCGGCGGCGGCCGUcacGGCg -3'
miRNA:   3'- -CGUCGcCGCCGCCGUCGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 49600 0.67 0.550518
Target:  5'- cGCGauCGGCGaCGGCgGGCGcCgGCGGCg -3'
miRNA:   3'- -CGUc-GCCGCcGCCG-UCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 50586 0.74 0.198054
Target:  5'- cGCGGCGGCugGGUGGcCGGCG-CCGgGGg -3'
miRNA:   3'- -CGUCGCCG--CCGCC-GUCGCuGGCgCCg -5'
10887 3' -64.7 NC_002794.1 + 50639 0.72 0.277294
Target:  5'- cCGGCGGUcGCGaaugaGCgaaaacauGGCGGCCGCGGCg -3'
miRNA:   3'- cGUCGCCGcCGC-----CG--------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 50769 0.74 0.202657
Target:  5'- gGCGGCGGCGaCGGC-GCGuCUcggGCGGCg -3'
miRNA:   3'- -CGUCGCCGCcGCCGuCGCuGG---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 51059 0.74 0.221504
Target:  5'- -gAGaCGGCGGCGaCGGCGACCuccgagcGUGGCg -3'
miRNA:   3'- cgUC-GCCGCCGCcGUCGCUGG-------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 52168 0.72 0.28959
Target:  5'- -aGGCGGCGGCGGU-GCGcAUCGCcuGCg -3'
miRNA:   3'- cgUCGCCGCCGCCGuCGC-UGGCGc-CG- -5'
10887 3' -64.7 NC_002794.1 + 52652 0.69 0.419275
Target:  5'- cGgAGCGGCGGCaGGCucuGCGccACCGagaGGg -3'
miRNA:   3'- -CgUCGCCGCCG-CCGu--CGC--UGGCg--CCg -5'
10887 3' -64.7 NC_002794.1 + 53051 0.7 0.350187
Target:  5'- cGCGGCuccaGCGuaGGCAGCGccgcgccgccaGCuCGCGGCa -3'
miRNA:   3'- -CGUCGc---CGCcgCCGUCGC-----------UG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 53110 0.68 0.461056
Target:  5'- cCGGCGGUuccGGagcucGCGuCGACCGCGGCg -3'
miRNA:   3'- cGUCGCCG---CCgc---CGUcGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 53273 0.67 0.557007
Target:  5'- aCAaCGG-GGCGGCgAGCGACCacuccaggugccgaGCGGUc -3'
miRNA:   3'- cGUcGCCgCCGCCG-UCGCUGG--------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 53620 0.68 0.469675
Target:  5'- cGCAGCGuCGGaCGGacgaGGuCGGCCGagcCGGCg -3'
miRNA:   3'- -CGUCGCcGCC-GCCg---UC-GCUGGC---GCCG- -5'
10887 3' -64.7 NC_002794.1 + 53764 0.7 0.357452
Target:  5'- cGCuGcCGGCGGCGGgAcgcccGCGACgCGCccGGCg -3'
miRNA:   3'- -CGuC-GCCGCCGCCgU-----CGCUG-GCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 54016 0.66 0.606723
Target:  5'- cGCAGCacGGCcgccuucuugGGCGucaGCuGCGACCcgucgacgugGCGGCa -3'
miRNA:   3'- -CGUCG--CCG----------CCGC---CGuCGCUGG----------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 54927 0.68 0.469675
Target:  5'- cGCAGCGuCcGCaGC-GCGACCGUGGUc -3'
miRNA:   3'- -CGUCGCcGcCGcCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 54987 0.79 0.092292
Target:  5'- cGCcGCGGCGaCGGCGGCGACuCGCcgGGCg -3'
miRNA:   3'- -CGuCGCCGCcGCCGUCGCUG-GCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 55191 0.72 0.265418
Target:  5'- gGCGGCGGCccuaacaccgGcGCGGCGGaGGCCgGCGGUc -3'
miRNA:   3'- -CGUCGCCG----------C-CGCCGUCgCUGG-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.