miRNA display CGI


Results 101 - 120 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 55278 0.91 0.014304
Target:  5'- gGCGGCGGUGGCGGCgacgagGGCGGCgGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCG------UCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 55357 0.78 0.120617
Target:  5'- -aGGCGGCcgaGGCGGCcgaGGCGGCCGaGGCg -3'
miRNA:   3'- cgUCGCCG---CCGCCG---UCGCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 55402 0.79 0.104288
Target:  5'- -aGGCGGCcgaGGCGGCcgaGGCGACCcCGGCg -3'
miRNA:   3'- cgUCGCCG---CCGCCG---UCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 56160 0.83 0.05442
Target:  5'- cGCAGCGGCaGCGGCcccggugcacguagAGCaccgGGCCGCGGCa -3'
miRNA:   3'- -CGUCGCCGcCGCCG--------------UCG----CUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 56303 0.78 0.112174
Target:  5'- cGCGcGCGGUcGCGGUcgcuGGCGGCCGUGGCc -3'
miRNA:   3'- -CGU-CGCCGcCGCCG----UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 58068 0.82 0.057643
Target:  5'- cCGGCGGCGGCGGgacgGGCGGCC-CGGCg -3'
miRNA:   3'- cGUCGCCGCCGCCg---UCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 58543 0.66 0.597282
Target:  5'- cGCcGCGGCGcGCGcGCuGCuGGCgCGCuGCg -3'
miRNA:   3'- -CGuCGCCGC-CGC-CGuCG-CUG-GCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 58755 0.67 0.559795
Target:  5'- gGCAGCuGGCGGaGG-AGCcGCUGCuGGCc -3'
miRNA:   3'- -CGUCG-CCGCCgCCgUCGcUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 59177 0.72 0.264253
Target:  5'- cGCAGCugcuggaccccguGGCGGUcgacgcgcacgucGGCGucuCGGCCGCGGCg -3'
miRNA:   3'- -CGUCG-------------CCGCCG-------------CCGUc--GCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 60640 0.71 0.329029
Target:  5'- cCGGCGcCGGCGGCGcCGGCCaccCGGCg -3'
miRNA:   3'- cGUCGCcGCCGCCGUcGCUGGc--GCCG- -5'
10887 3' -64.7 NC_002794.1 + 61522 0.76 0.153189
Target:  5'- aCGGCGGCcgccGGCGGCcgccGCGaagacgacgccGCCGCGGCg -3'
miRNA:   3'- cGUCGCCG----CCGCCGu---CGC-----------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 61821 0.68 0.461056
Target:  5'- cCGGCGGCcgccGGCGGcCGGCGucacuCCGCuccGCg -3'
miRNA:   3'- cGUCGCCG----CCGCC-GUCGCu----GGCGc--CG- -5'
10887 3' -64.7 NC_002794.1 + 61881 0.72 0.283389
Target:  5'- cGUcGuCGGCGcCGcGCGGCGAgCGCGGCg -3'
miRNA:   3'- -CGuC-GCCGCcGC-CGUCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 62067 0.79 0.101777
Target:  5'- cCGGCGGCGacgcCGGCGGCGACgacggcgaCGCGGCg -3'
miRNA:   3'- cGUCGCCGCc---GCCGUCGCUG--------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 62492 0.77 0.129646
Target:  5'- cGCgAGUGGaCGGCgGGCGGCG-CCGcCGGCg -3'
miRNA:   3'- -CG-UCGCC-GCCG-CCGUCGCuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 63455 0.82 0.064812
Target:  5'- cGCGGCGGCgacgaugacgacgaGGCGGCGGcCGccgucgacgacGCCGCGGCg -3'
miRNA:   3'- -CGUCGCCG--------------CCGCCGUC-GC-----------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 64800 0.75 0.176387
Target:  5'- cGCGGCGagcgacgccGCGGaCGGCGGCGAgC-CGGCg -3'
miRNA:   3'- -CGUCGC---------CGCC-GCCGUCGCUgGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 65235 0.79 0.092292
Target:  5'- gGCGGCGGuCGccGCGGCGGCGAUC-CGGCc -3'
miRNA:   3'- -CGUCGCC-GC--CGCCGUCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 65928 0.82 0.05622
Target:  5'- cCGGCGGCGGUGGCGuCGGCgGCGGUa -3'
miRNA:   3'- cGUCGCCGCCGCCGUcGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 65998 0.74 0.227083
Target:  5'- -gGGCGGUGauccCGGCaccgaGGCGGCCGCGGUc -3'
miRNA:   3'- cgUCGCCGCc---GCCG-----UCGCUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.