miRNA display CGI


Results 121 - 140 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 66576 0.68 0.469675
Target:  5'- cCGGCGcCGGCGGCAGCcccgaguGCUGagaaGGCg -3'
miRNA:   3'- cGUCGCcGCCGCCGUCGc------UGGCg---CCG- -5'
10887 3' -64.7 NC_002794.1 + 66627 0.67 0.541288
Target:  5'- -aGGCGGUGGCGGgAGgaGGuCCGUccgggGGCa -3'
miRNA:   3'- cgUCGCCGCCGCCgUCg-CU-GGCG-----CCG- -5'
10887 3' -64.7 NC_002794.1 + 66740 0.81 0.066943
Target:  5'- gGCGGUGGCGGCGGCGcguaCGACCGCuGGa -3'
miRNA:   3'- -CGUCGCCGCCGCCGUc---GCUGGCG-CCg -5'
10887 3' -64.7 NC_002794.1 + 66867 0.77 0.139297
Target:  5'- gGCcGCGGCGuGCGGCugAGCcAUCGCGGCc -3'
miRNA:   3'- -CGuCGCCGC-CGCCG--UCGcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 67018 0.78 0.106857
Target:  5'- cCGGCGGCGGCGGcCGGCucCCGCcGCg -3'
miRNA:   3'- cGUCGCCGCCGCC-GUCGcuGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 67411 0.73 0.253957
Target:  5'- cCAGCGuCGGCGcCAGCGuCgGCGGCg -3'
miRNA:   3'- cGUCGCcGCCGCcGUCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 67735 0.69 0.403217
Target:  5'- cCGGCGGCGGCcacccgagcccGGaucaCGGCuCGCGGCa -3'
miRNA:   3'- cGUCGCCGCCG-----------CCguc-GCUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 68295 0.68 0.461056
Target:  5'- -gGGCGuacgaacgccucGUGGCGGCcgacGCGuuCCGCGGCc -3'
miRNA:   3'- cgUCGC------------CGCCGCCGu---CGCu-GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 68475 0.69 0.419275
Target:  5'- cGCAGUGG-GGCacGGaGGCGGCCGagcCGGCc -3'
miRNA:   3'- -CGUCGCCgCCG--CCgUCGCUGGC---GCCG- -5'
10887 3' -64.7 NC_002794.1 + 68548 0.66 0.606723
Target:  5'- cGCGGCcgacaaGCuGCGGguGUcGCCGaCGGCg -3'
miRNA:   3'- -CGUCGc-----CGcCGCCguCGcUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 68915 0.7 0.350187
Target:  5'- cGCGG-GGCucGCGGCGuccucgucgcccGCgGGCCGCGGCg -3'
miRNA:   3'- -CGUCgCCGc-CGCCGU------------CG-CUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 70043 0.67 0.531196
Target:  5'- aGCAGCacguaggucgcccGGUcgGGCGGCcGCaGCCGCaGCa -3'
miRNA:   3'- -CGUCG-------------CCG--CCGCCGuCGcUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 70658 0.74 0.212142
Target:  5'- -uGGCcucGUGcGCGGCGGCcGCCGCGGCg -3'
miRNA:   3'- cgUCGc--CGC-CGCCGUCGcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 70870 0.75 0.176387
Target:  5'- cCGGCGGCGGCaGCGGCGGCUccuCGaGCg -3'
miRNA:   3'- cGUCGCCGCCGcCGUCGCUGGc--GC-CG- -5'
10887 3' -64.7 NC_002794.1 + 71233 0.68 0.496009
Target:  5'- cGUAGUGGCGGcCGGC-GUGGaC-CGGCa -3'
miRNA:   3'- -CGUCGCCGCC-GCCGuCGCUgGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 71336 0.7 0.39299
Target:  5'- gGCGGCgaugucguccgccaGGCGGC-GCAGCaGgUGCGGCa -3'
miRNA:   3'- -CGUCG--------------CCGCCGcCGUCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 71785 0.68 0.461056
Target:  5'- cGC-GCGGCGaGUcGCcccccGGCGGgCGCGGCg -3'
miRNA:   3'- -CGuCGCCGC-CGcCG-----UCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 72336 0.71 0.32834
Target:  5'- uGCAGuCGGUggagccGGUGGCGcugcaccgucugcGCGuCCGCGGCc -3'
miRNA:   3'- -CGUC-GCCG------CCGCCGU-------------CGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 72422 0.76 0.146092
Target:  5'- cGCGGCGGaggaggagcCGGCGG-AGgGACCGgCGGCg -3'
miRNA:   3'- -CGUCGCC---------GCCGCCgUCgCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 72474 0.71 0.32834
Target:  5'- cGCGGCGGCGcCGaaaagacgaucacGCAGUcgGGCaCGCGGCa -3'
miRNA:   3'- -CGUCGCCGCcGC-------------CGUCG--CUG-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.