miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 195218 0.72 0.28959
Target:  5'- cCAGCuGCGGCaGCAGCccgCGCGGCg -3'
miRNA:   3'- cGUCGcCGCCGcCGUCGcugGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 194959 0.69 0.410395
Target:  5'- aGCAGCGGCacgaacgccGGCucguacaGGCacAGCG-CCGCGcGCa -3'
miRNA:   3'- -CGUCGCCG---------CCG-------CCG--UCGCuGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 194923 0.67 0.52299
Target:  5'- aGCAGCGGCcGCacCAGCu-CCGaCGGCg -3'
miRNA:   3'- -CGUCGCCGcCGccGUCGcuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 194794 0.69 0.402424
Target:  5'- cGCAGCGGCucccaGUGccccaccagccGCAGCGACgcgcgcuCGCGGCc -3'
miRNA:   3'- -CGUCGCCGc----CGC-----------CGUCGCUG-------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 194138 0.8 0.085735
Target:  5'- gGCAGCGGCcGCaGCAGCGcCCGCGaGCc -3'
miRNA:   3'- -CGUCGCCGcCGcCGUCGCuGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 193745 0.73 0.237532
Target:  5'- --cGCGGCuuCGGCgAGCGACCGcCGGCc -3'
miRNA:   3'- cguCGCCGccGCCG-UCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 193582 0.81 0.068627
Target:  5'- cGCGcCGGUGGCGGCucaccgucguguAGCGuACCGCGGCg -3'
miRNA:   3'- -CGUcGCCGCCGCCG------------UCGC-UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 192986 0.67 0.541288
Target:  5'- gGC-GCGGUcgcccucgcccGGCGuguGCAGCG-CCaGCGGCg -3'
miRNA:   3'- -CGuCGCCG-----------CCGC---CGUCGCuGG-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 192154 0.71 0.345879
Target:  5'- cGCGGUcGCGGCGGagccugcgguaggucCGGCGAagGCGGCc -3'
miRNA:   3'- -CGUCGcCGCCGCC---------------GUCGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 192007 0.84 0.041593
Target:  5'- gGUAGCGGCGGUGGCcGCGGCUgcuguuucugugGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCGuCGCUGG------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 191875 0.75 0.193542
Target:  5'- gGCGGCGGaGGgGGCGGCGGagGCGGg -3'
miRNA:   3'- -CGUCGCCgCCgCCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 191653 0.82 0.05622
Target:  5'- aGCAGCccgccgggggacGGCGcCGGCAGCGGCgGCGGCg -3'
miRNA:   3'- -CGUCG------------CCGCcGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 190988 0.68 0.469675
Target:  5'- gGCAgcGCGGCGaCGGCGucGCGAUCGgccguucgauCGGCa -3'
miRNA:   3'- -CGU--CGCCGCcGCCGU--CGCUGGC----------GCCG- -5'
10887 3' -64.7 NC_002794.1 + 190735 0.76 0.159465
Target:  5'- cGCAGCGcccgccgccgucucGaCGGgGGCGGCGGCCGCGcGUc -3'
miRNA:   3'- -CGUCGC--------------C-GCCgCCGUCGCUGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 190028 0.66 0.619965
Target:  5'- gGCGGcCGGUaGCGcacGUAGCGcugacucaucgugucGCCGCGGUg -3'
miRNA:   3'- -CGUC-GCCGcCGC---CGUCGC---------------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 189840 0.68 0.487155
Target:  5'- aCAGCGGgGucuCGGCcGCGgaGCCGuCGGCg -3'
miRNA:   3'- cGUCGCCgCc--GCCGuCGC--UGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 188783 0.71 0.308829
Target:  5'- uGCAGCGGUaGCGGCcggccccgccgAGCG-CCGUccaGGCg -3'
miRNA:   3'- -CGUCGCCGcCGCCG-----------UCGCuGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 188344 0.73 0.234356
Target:  5'- gGCGGCGccgucgcgcccgucCGGcCGGCGGCGGCCGagGGCg -3'
miRNA:   3'- -CGUCGCc-------------GCC-GCCGUCGCUGGCg-CCG- -5'
10887 3' -64.7 NC_002794.1 + 188252 0.86 0.029941
Target:  5'- gGCGGCGGCGGCGGUAGCGgcggGCCG-GGUa -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGC----UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 187499 0.67 0.550518
Target:  5'- gGCcGC-GCaGGCGGCcagGGCGcCCGCGGa -3'
miRNA:   3'- -CGuCGcCG-CCGCCG---UCGCuGGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.