miRNA display CGI


Results 41 - 60 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 180873 0.71 0.311467
Target:  5'- gGCGGCGGaucCGGCGcgcccggucucggccGCGGacuCGGCCGCGGUc -3'
miRNA:   3'- -CGUCGCC---GCCGC---------------CGUC---GCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 180760 0.75 0.193542
Target:  5'- gGCGGCuucGGCGGCaacuguccgGGCGGUGGCCGgGGa -3'
miRNA:   3'- -CGUCG---CCGCCG---------CCGUCGCUGGCgCCg -5'
10887 3' -64.7 NC_002794.1 + 180079 0.66 0.606723
Target:  5'- -aAGCGGCGGaCGGUAuCgGugCGCagGGCu -3'
miRNA:   3'- cgUCGCCGCC-GCCGUcG-CugGCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 179975 0.78 0.112174
Target:  5'- aGCGGCaggagccaaGGCGGUGGCcGCGACgGCGGg -3'
miRNA:   3'- -CGUCG---------CCGCCGCCGuCGCUGgCGCCg -5'
10887 3' -64.7 NC_002794.1 + 179681 0.91 0.014675
Target:  5'- cGCGGCGGCgacgguGGCGGCGGCGACgGUGGCg -3'
miRNA:   3'- -CGUCGCCG------CCGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 179194 0.69 0.435715
Target:  5'- cGCAGgcacgcccCGGcCGGCGGCA-CGACggaCGUGGCc -3'
miRNA:   3'- -CGUC--------GCC-GCCGCCGUcGCUG---GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 178791 0.68 0.461056
Target:  5'- -gGGCGGgaaGGCGGCucggcccggGGgGACCG-GGCa -3'
miRNA:   3'- cgUCGCCg--CCGCCG---------UCgCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 177962 0.71 0.335975
Target:  5'- gGUGGaCGGUGGUGGaCGGUuggaGGCuCGCGGCa -3'
miRNA:   3'- -CGUC-GCCGCCGCC-GUCG----CUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 176381 0.69 0.419275
Target:  5'- aCAGCGaacccGCGGCGGCAGCcACC-UGGg -3'
miRNA:   3'- cGUCGC-----CGCCGCCGUCGcUGGcGCCg -5'
10887 3' -64.7 NC_002794.1 + 159298 0.66 0.616179
Target:  5'- -gGGCGGaGGUGGCAGCuaGCCauuCGGUa -3'
miRNA:   3'- cgUCGCCgCCGCCGUCGc-UGGc--GCCG- -5'
10887 3' -64.7 NC_002794.1 + 156458 0.67 0.513931
Target:  5'- gGCGGUugguuaGGgGGCGGgGGaCGACgggGCGGCu -3'
miRNA:   3'- -CGUCG------CCgCCGCCgUC-GCUGg--CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 156399 0.79 0.101777
Target:  5'- -gAGCGGcCGGC-GCcGCGGCCGCGGCc -3'
miRNA:   3'- cgUCGCC-GCCGcCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 154377 0.76 0.160597
Target:  5'- cGCGGCGGCGGCgGGCAcgcccguucGCGugguGCCgGUGGCc -3'
miRNA:   3'- -CGUCGCCGCCG-CCGU---------CGC----UGG-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 154324 0.7 0.356721
Target:  5'- -gAGCGGCGuCGGUcgucccgGGUG-CCGCGGCc -3'
miRNA:   3'- cgUCGCCGCcGCCG-------UCGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 153124 0.73 0.259636
Target:  5'- uCGGguuCGGUGGCGGCAGCGGguCCGgaaCGGCc -3'
miRNA:   3'- cGUC---GCCGCCGCCGUCGCU--GGC---GCCG- -5'
10887 3' -64.7 NC_002794.1 + 152564 0.72 0.283389
Target:  5'- aGgAGCGGCGcuucaccgccGCGGCGGCcGCCacgucccuGCGGCg -3'
miRNA:   3'- -CgUCGCCGC----------CGCCGUCGcUGG--------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 151572 0.72 0.277294
Target:  5'- cGUAGCGcccccCGGCGGCGcGCGccgccGCCGCGGg -3'
miRNA:   3'- -CGUCGCc----GCCGCCGU-CGC-----UGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 150399 0.67 0.559795
Target:  5'- cGCccUGGuuGCGGCAGaaGCCGUGGCc -3'
miRNA:   3'- -CGucGCCgcCGCCGUCgcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 150297 0.68 0.478376
Target:  5'- cGguGUGGUGGCaGCGGaucacCGGCCGCGu- -3'
miRNA:   3'- -CguCGCCGCCGcCGUC-----GCUGGCGCcg -5'
10887 3' -64.7 NC_002794.1 + 150227 0.71 0.322189
Target:  5'- aGCuGCGuGCGaCGGCAGCuggaagcGCUGCGGCu -3'
miRNA:   3'- -CGuCGC-CGCcGCCGUCGc------UGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.