miRNA display CGI


Results 61 - 80 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 149744 0.66 0.587864
Target:  5'- cCGGUGGa-GCGGCGG-GACCGCugucucGGCc -3'
miRNA:   3'- cGUCGCCgcCGCCGUCgCUGGCG------CCG- -5'
10887 3' -64.7 NC_002794.1 + 149671 0.68 0.464494
Target:  5'- aGCGGgGGCgcgucgcgcucgacuGGCcGCGGgGGCCGCcuGGCg -3'
miRNA:   3'- -CGUCgCCG---------------CCGcCGUCgCUGGCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 149287 0.67 0.526631
Target:  5'- cGCGGCGGCucgcucacggggGGCGGguGUagguagggcaagucgGACCGgaccgaacCGGCc -3'
miRNA:   3'- -CGUCGCCG------------CCGCCguCG---------------CUGGC--------GCCG- -5'
10887 3' -64.7 NC_002794.1 + 148642 0.66 0.606723
Target:  5'- cGCGGCGGCGuGCucGGCuacgcGcCGACCGaGGa -3'
miRNA:   3'- -CGUCGCCGC-CG--CCGu----C-GCUGGCgCCg -5'
10887 3' -64.7 NC_002794.1 + 147976 0.66 0.597282
Target:  5'- uGCAGCGuGUGGCGGUgucccugcuGGCcuucguCCGCgucGGCc -3'
miRNA:   3'- -CGUCGC-CGCCGCCG---------UCGcu----GGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 147694 0.73 0.242906
Target:  5'- cCGGCGGCGauGCGGCGcacguGCGccaguACCGCGGUc -3'
miRNA:   3'- cGUCGCCGC--CGCCGU-----CGC-----UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146992 0.81 0.075595
Target:  5'- cGCcGcCGGCcgacgucGGCGGCGGCGGCCGcCGGCg -3'
miRNA:   3'- -CGuC-GCCG-------CCGCCGUCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 146616 0.68 0.504935
Target:  5'- -aGGCGGCgaggacgucgaaGGCGGUAcCGGgaGCGGCg -3'
miRNA:   3'- cgUCGCCG------------CCGCCGUcGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146327 0.67 0.554223
Target:  5'- cGC-GCGGCGGauuCGaccccgucgucgaucGCGGCGGCCGCccgGGUa -3'
miRNA:   3'- -CGuCGCCGCC---GC---------------CGUCGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 145894 0.66 0.606723
Target:  5'- aGCGGCGaGCGcGaCGGgGGaguCGACCGCGccgaGCg -3'
miRNA:   3'- -CGUCGC-CGC-C-GCCgUC---GCUGGCGC----CG- -5'
10887 3' -64.7 NC_002794.1 + 145738 0.75 0.193542
Target:  5'- gGCGGCGGCGcCGGCaucgacGGCGACCccgaGCGaGCg -3'
miRNA:   3'- -CGUCGCCGCcGCCG------UCGCUGG----CGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 145586 0.68 0.452521
Target:  5'- cGgAGCGGCGGC--CGGCucCCGCGGa -3'
miRNA:   3'- -CgUCGCCGCCGccGUCGcuGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 145394 0.68 0.49512
Target:  5'- uCGGUGGCGcGCcGC-GCGGCCuuaaagcGCGGCg -3'
miRNA:   3'- cGUCGCCGC-CGcCGuCGCUGG-------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 145318 0.71 0.315456
Target:  5'- cCGGCGcGCGGCgGGCGGCGcUCG-GGCc -3'
miRNA:   3'- cGUCGC-CGCCG-CCGUCGCuGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 145247 0.68 0.469675
Target:  5'- cGCuGCGGaaGCGGaucgcgaAGCGguuauuGCCGUGGCa -3'
miRNA:   3'- -CGuCGCCgcCGCCg------UCGC------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 145197 0.75 0.193542
Target:  5'- cGCcGCGGCGGCccuccGGCAGCGcuccuUCGUGGUg -3'
miRNA:   3'- -CGuCGCCGCCG-----CCGUCGCu----GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 145116 0.66 0.569115
Target:  5'- cGCGGUGuCGG-GGCAGCucauGCUGCGGg -3'
miRNA:   3'- -CGUCGCcGCCgCCGUCGc---UGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 143830 0.7 0.379873
Target:  5'- gGCgAGCGGcCGGUccgacgccuccGGCcaGGCGaucgccGCCGCGGCg -3'
miRNA:   3'- -CG-UCGCC-GCCG-----------CCG--UCGC------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 143280 0.67 0.550518
Target:  5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3'
miRNA:   3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 143065 0.73 0.235411
Target:  5'- cGUAGCGcccGCGGCGGCAGaCGuaguggagguugCGCGGCg -3'
miRNA:   3'- -CGUCGC---CGCCGCCGUC-GCug----------GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.