miRNA display CGI


Results 81 - 100 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 142717 0.66 0.597282
Target:  5'- aGUGGUGGUGGgGGUcGCGGuaaCGCaGGCc -3'
miRNA:   3'- -CGUCGCCGCCgCCGuCGCUg--GCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 142488 0.8 0.07768
Target:  5'- cGCGuGCGGCGcCGGCAGCGA-CGUGGCg -3'
miRNA:   3'- -CGU-CGCCGCcGCCGUCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142386 0.78 0.123559
Target:  5'- aGCGGCGGagaCGGCGGUgcaGGCGGCgucgGCGGCg -3'
miRNA:   3'- -CGUCGCC---GCCGCCG---UCGCUGg---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142358 0.74 0.207353
Target:  5'- -aGGCGGCGGaGGCGGCGGagGCGGa -3'
miRNA:   3'- cgUCGCCGCCgCCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 142328 0.82 0.065298
Target:  5'- cGCAgGCGGCGGaGGCGGCGGagGCGGCg -3'
miRNA:   3'- -CGU-CGCCGCCgCCGUCGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142301 0.67 0.550518
Target:  5'- -aGGCGGUacaGGUGGCGGaGGCgGCGGn -3'
miRNA:   3'- cgUCGCCG---CCGCCGUCgCUGgCGCCg -5'
10887 3' -64.7 NC_002794.1 + 142208 0.89 0.019934
Target:  5'- -aAGCGGCGGCGGCAGCGGCggugcggggaGCGGCg -3'
miRNA:   3'- cgUCGCCGCCGCCGUCGCUGg---------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142152 0.76 0.160219
Target:  5'- gGCGGaGGCGGCGGUAGC-ACCGgcagcguCGGCa -3'
miRNA:   3'- -CGUCgCCGCCGCCGUCGcUGGC-------GCCG- -5'
10887 3' -64.7 NC_002794.1 + 141644 0.71 0.315456
Target:  5'- -aGGcCGGC-GUGGCcGCGGCCGcCGGCg -3'
miRNA:   3'- cgUC-GCCGcCGCCGuCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 141429 0.76 0.154645
Target:  5'- -gGGCGGCGGgGGCgccgggggcgccgggAGCGG-CGCGGCg -3'
miRNA:   3'- cgUCGCCGCCgCCG---------------UCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 141334 0.74 0.217026
Target:  5'- uCGGUGGCGaGCGaagacgagaGCAGCGACgagaGCGGCg -3'
miRNA:   3'- cGUCGCCGC-CGC---------CGUCGCUGg---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 140087 0.71 0.314788
Target:  5'- cCAGCaGGacguccaUGGuCGGCGGCGAUCGaCGGCg -3'
miRNA:   3'- cGUCG-CC-------GCC-GCCGUCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 140003 0.72 0.271303
Target:  5'- cGguGCGGguggaGGCcGCGGaGGCCGCGGCc -3'
miRNA:   3'- -CguCGCCg----CCGcCGUCgCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 139559 0.68 0.473146
Target:  5'- gGUAGaucCGGCGGCugcuguuuuguuuccGGCGGUGGaugaCGCGGUa -3'
miRNA:   3'- -CGUC---GCCGCCG---------------CCGUCGCUg---GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 138940 0.69 0.427448
Target:  5'- cGguGCGcccccaccGUGGCGuGCuGCGA-CGCGGCg -3'
miRNA:   3'- -CguCGC--------CGCCGC-CGuCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 138588 0.66 0.597282
Target:  5'- -aGGCGcGuCGGC-GCGGCGGagaGCGGCu -3'
miRNA:   3'- cgUCGC-C-GCCGcCGUCGCUgg-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 138436 0.82 0.057643
Target:  5'- aGCcGCGGUGGCGGCGGCG-CCuCGGCc -3'
miRNA:   3'- -CGuCGCCGCCGCCGUCGCuGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 137948 0.68 0.496009
Target:  5'- gGCAGCGGCGGauGCGuucGCCGaGGCc -3'
miRNA:   3'- -CGUCGCCGCCgcCGUcgcUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 137611 0.7 0.348028
Target:  5'- gGCGGUcGCGGCGGCGGUGcCCacgacgacguccugGCGGg -3'
miRNA:   3'- -CGUCGcCGCCGCCGUCGCuGG--------------CGCCg -5'
10887 3' -64.7 NC_002794.1 + 136615 0.66 0.597282
Target:  5'- aGCGuguGCaGGUGGgucUGGCAGCGGCUcaGgGGCa -3'
miRNA:   3'- -CGU---CG-CCGCC---GCCGUCGCUGG--CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.