miRNA display CGI


Results 101 - 120 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 136420 0.69 0.400052
Target:  5'- aCGGCGguccauaaccggaGCGGCGGCuGCGuCCGCuguugggucaggucGGCg -3'
miRNA:   3'- cGUCGC-------------CGCCGCCGuCGCuGGCG--------------CCG- -5'
10887 3' -64.7 NC_002794.1 + 134197 0.66 0.606723
Target:  5'- uCGGCuGGUGGgGGCcgucggucgccaAGCGACCGCc-- -3'
miRNA:   3'- cGUCG-CCGCCgCCG------------UCGCUGGCGccg -5'
10887 3' -64.7 NC_002794.1 + 134134 0.67 0.526631
Target:  5'- cGCGGCGaGC-GCGGaAGCucgguccguguugcuGGCCGUGGCc -3'
miRNA:   3'- -CGUCGC-CGcCGCCgUCG---------------CUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 131022 0.66 0.587864
Target:  5'- uCGGUGGuCGuGCGGC-GCGGCCgGCuGCc -3'
miRNA:   3'- cGUCGCC-GC-CGCCGuCGCUGG-CGcCG- -5'
10887 3' -64.7 NC_002794.1 + 130459 0.7 0.379873
Target:  5'- gGCGGCGaggcGCuGGCGGCuuGCGugCGCGa- -3'
miRNA:   3'- -CGUCGC----CG-CCGCCGu-CGCugGCGCcg -5'
10887 3' -64.7 NC_002794.1 + 129932 0.82 0.060595
Target:  5'- gGCcGUGGCGaCGGCGGCGGCgGCGGCu -3'
miRNA:   3'- -CGuCGCCGCcGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 129218 0.71 0.314788
Target:  5'- aCGGCGGUGGauaGGCgcgaacgGGCGGCUcCGGCg -3'
miRNA:   3'- cGUCGCCGCCg--CCG-------UCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 129067 0.7 0.395335
Target:  5'- cGguGUGucGCGGCuGGCGGCGgACCGUccGGUg -3'
miRNA:   3'- -CguCGC--CGCCG-CCGUCGC-UGGCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 128277 0.66 0.582226
Target:  5'- aGC-GCGGagccgaCGGCcGUcuucgacaccgagacGGCGACCGUGGCg -3'
miRNA:   3'- -CGuCGCC------GCCGcCG---------------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 128151 0.7 0.350187
Target:  5'- aGCGacGCGaCGGCGGCucGCG-CCGCGGa -3'
miRNA:   3'- -CGU--CGCcGCCGCCGu-CGCuGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 127984 0.7 0.350187
Target:  5'- uGguGUGGUGGUgucugGGCGGaCGACCGUcgucGGCc -3'
miRNA:   3'- -CguCGCCGCCG-----CCGUC-GCUGGCG----CCG- -5'
10887 3' -64.7 NC_002794.1 + 127354 0.83 0.049476
Target:  5'- cGCucGCGGCGGCGGC-GCGGCCGCucgugucGGCg -3'
miRNA:   3'- -CGu-CGCCGCCGCCGuCGCUGGCG-------CCG- -5'
10887 3' -64.7 NC_002794.1 + 126609 0.67 0.559795
Target:  5'- -aGGcCGGCGccgacgucGCGGCGugagcGCGACCG-GGCg -3'
miRNA:   3'- cgUC-GCCGC--------CGCCGU-----CGCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 126385 0.8 0.08365
Target:  5'- cGCcGgGGCcugcGCGGCGGCGugCGCGGCg -3'
miRNA:   3'- -CGuCgCCGc---CGCCGUCGCugGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 126264 0.75 0.186511
Target:  5'- uCGGCGGCuGGCuGGCGGCGcugggcuugcugugcGCCGCGcGCc -3'
miRNA:   3'- cGUCGCCG-CCG-CCGUCGC---------------UGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 126220 0.68 0.487155
Target:  5'- cCAGCGGUacaagaucgGGaCcGUGGCGAUCGUGGCg -3'
miRNA:   3'- cGUCGCCG---------CC-GcCGUCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 125737 0.74 0.207353
Target:  5'- -aGGCGGaGGCGGgccgcgggaCGGCGGCCGgCGGCu -3'
miRNA:   3'- cgUCGCCgCCGCC---------GUCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 125532 0.77 0.135684
Target:  5'- cGCGGCGaacgagcGCGGCGGCAGCGGuuuCUuCGGCg -3'
miRNA:   3'- -CGUCGC-------CGCCGCCGUCGCU---GGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 125452 0.72 0.277294
Target:  5'- gGCGaCGGCGGCGaGCA-CGGCCGCGa- -3'
miRNA:   3'- -CGUcGCCGCCGC-CGUcGCUGGCGCcg -5'
10887 3' -64.7 NC_002794.1 + 125015 0.68 0.496009
Target:  5'- aGCGGUccGCGGCGGCcGUcACCaCGGCg -3'
miRNA:   3'- -CGUCGc-CGCCGCCGuCGcUGGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.