miRNA display CGI


Results 101 - 120 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 185552 0.67 0.557007
Target:  5'- cCGGCcGCGcgccccgcccugccGCGGCAG-GGCgCGCGGCu -3'
miRNA:   3'- cGUCGcCGC--------------CGCCGUCgCUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 53273 0.67 0.557007
Target:  5'- aCAaCGG-GGCGGCgAGCGACCacuccaggugccgaGCGGUc -3'
miRNA:   3'- cGUcGCCgCCGCCG-UCGCUGG--------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146327 0.67 0.554223
Target:  5'- cGC-GCGGCGGauuCGaccccgucgucgaucGCGGCGGCCGCccgGGUa -3'
miRNA:   3'- -CGuCGCCGCC---GC---------------CGUCGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 143280 0.67 0.550518
Target:  5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3'
miRNA:   3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116907 0.67 0.550518
Target:  5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3'
miRNA:   3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 112544 0.66 0.569115
Target:  5'- aGUAGCGGUaGCGG-GGCucGCCGcCGGCc -3'
miRNA:   3'- -CGUCGCCGcCGCCgUCGc-UGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 3763 0.66 0.569115
Target:  5'- gGCGG-GGCGGgGG-AGUGACUcaGCGGg -3'
miRNA:   3'- -CGUCgCCGCCgCCgUCGCUGG--CGCCg -5'
10887 3' -64.7 NC_002794.1 + 149744 0.66 0.587864
Target:  5'- cCGGUGGa-GCGGCGG-GACCGCugucucGGCc -3'
miRNA:   3'- cGUCGCCgcCGCCGUCgCUGGCG------CCG- -5'
10887 3' -64.7 NC_002794.1 + 117081 0.66 0.587864
Target:  5'- aCGGCGGCaGCGGC-GUGuCCacuuCGGCc -3'
miRNA:   3'- cGUCGCCGcCGCCGuCGCuGGc---GCCG- -5'
10887 3' -64.7 NC_002794.1 + 131022 0.66 0.587864
Target:  5'- uCGGUGGuCGuGCGGC-GCGGCCgGCuGCc -3'
miRNA:   3'- cGUCGCC-GC-CGCCGuCGCUGG-CGcCG- -5'
10887 3' -64.7 NC_002794.1 + 120515 0.66 0.587864
Target:  5'- gGCAGCcugcaGGCGGUGGCccccgGGCuGACCaGCcuGGUc -3'
miRNA:   3'- -CGUCG-----CCGCCGCCG-----UCG-CUGG-CG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 20391 0.66 0.578473
Target:  5'- --cGCGGU-GCGGCGG-GACCGgGaGCg -3'
miRNA:   3'- cguCGCCGcCGCCGUCgCUGGCgC-CG- -5'
10887 3' -64.7 NC_002794.1 + 128277 0.66 0.582226
Target:  5'- aGC-GCGGagccgaCGGCcGUcuucgacaccgagacGGCGACCGUGGCg -3'
miRNA:   3'- -CGuCGCC------GCCGcCG---------------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 76789 0.66 0.587864
Target:  5'- -gAGCcgGGCgGGCGaGCGGCGACCacCGGa -3'
miRNA:   3'- cgUCG--CCG-CCGC-CGUCGCUGGc-GCCg -5'
10887 3' -64.7 NC_002794.1 + 89530 0.66 0.578473
Target:  5'- -gAGuCGGCGGaGGCAGCaGACgCGaCGGa -3'
miRNA:   3'- cgUC-GCCGCCgCCGUCG-CUG-GC-GCCg -5'
10887 3' -64.7 NC_002794.1 + 44555 0.66 0.575662
Target:  5'- cCGGCGGCGGCGcccguugacgucacGCGG-GACCGa-GCc -3'
miRNA:   3'- cGUCGCCGCCGC--------------CGUCgCUGGCgcCG- -5'
10887 3' -64.7 NC_002794.1 + 184481 0.66 0.569115
Target:  5'- aCGGCGcGCGG-GGCcccggacgcccgGGCGGCgcgggccccgcgCGCGGCg -3'
miRNA:   3'- cGUCGC-CGCCgCCG------------UCGCUG------------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 101511 0.66 0.569115
Target:  5'- cGguGCGGCacacGcCGGCGGgGugCcCGGCg -3'
miRNA:   3'- -CguCGCCGc---C-GCCGUCgCugGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 108312 0.66 0.569115
Target:  5'- uGCGcCGGCGGUGGgucuuG-GACgGCGGCg -3'
miRNA:   3'- -CGUcGCCGCCGCCgu---CgCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 184813 0.66 0.569115
Target:  5'- aGCAGCGucaCGG-GGCAcGCGuCCG-GGCg -3'
miRNA:   3'- -CGUCGCc--GCCgCCGU-CGCuGGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.