miRNA display CGI


Results 41 - 60 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 123333 0.66 0.614287
Target:  5'- cGCAGCuGGgGGUGGCGuuccaacgguacCGGCCGCucugcgugGGCu -3'
miRNA:   3'- -CGUCG-CCgCCGCCGUc-----------GCUGGCG--------CCG- -5'
10887 3' -64.7 NC_002794.1 + 159298 0.66 0.616179
Target:  5'- -gGGCGGaGGUGGCAGCuaGCCauuCGGUa -3'
miRNA:   3'- cgUCGCCgCCGCCGUCGc-UGGc--GCCG- -5'
10887 3' -64.7 NC_002794.1 + 107587 0.66 0.619965
Target:  5'- aCGGCGGagaagaCGGCGGgggagacggggaagaCGGgGACgGUGGCg -3'
miRNA:   3'- cGUCGCC------GCCGCC---------------GUCgCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 37767 0.66 0.616179
Target:  5'- cCGGCGG-GaGCGGCcgucgucGuCGGCCGCaGGCg -3'
miRNA:   3'- cGUCGCCgC-CGCCGu------C-GCUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 21940 0.66 0.616179
Target:  5'- cGCGGCgcucgucgaaGGCcGuCGGCcGCucCCGCGGCg -3'
miRNA:   3'- -CGUCG----------CCGcC-GCCGuCGcuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 19527 0.66 0.606723
Target:  5'- aGCGcCGGC-GCGGC-GCGGCCcGcCGGUg -3'
miRNA:   3'- -CGUcGCCGcCGCCGuCGCUGG-C-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 68548 0.66 0.606723
Target:  5'- cGCGGCcgacaaGCuGCGGguGUcGCCGaCGGCg -3'
miRNA:   3'- -CGUCGc-----CGcCGCCguCGcUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 40545 0.66 0.594454
Target:  5'- -aGGgGGcCGGCGGCAugagcuucucguucGCGccguccugGCCGCGGg -3'
miRNA:   3'- cgUCgCC-GCCGCCGU--------------CGC--------UGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 117671 0.66 0.594454
Target:  5'- cGCGGCGGCgcguacugcacguaGGCcucGCAcgccGCGACggCGUGGCa -3'
miRNA:   3'- -CGUCGCCG--------------CCGc--CGU----CGCUG--GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142717 0.66 0.597282
Target:  5'- aGUGGUGGUGGgGGUcGCGGuaaCGCaGGCc -3'
miRNA:   3'- -CGUCGCCGCCgCCGuCGCUg--GCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 11642 0.66 0.597282
Target:  5'- aCAGCGaCgGGCGGCcGaCGA-CGCGGCc -3'
miRNA:   3'- cGUCGCcG-CCGCCGuC-GCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49051 0.66 0.597282
Target:  5'- uCAGCGuccagGGCGcGCAGCacGACuCGCGGUa -3'
miRNA:   3'- cGUCGCcg---CCGC-CGUCG--CUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 13340 0.66 0.597282
Target:  5'- cCGGuCGGgGGUGGCGGCGccccUCGCccgGGCc -3'
miRNA:   3'- cGUC-GCCgCCGCCGUCGCu---GGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 136615 0.66 0.597282
Target:  5'- aGCGuguGCaGGUGGgucUGGCAGCGGCUcaGgGGCa -3'
miRNA:   3'- -CGU---CG-CCGCC---GCCGUCGCUGG--CgCCG- -5'
10887 3' -64.7 NC_002794.1 + 147976 0.66 0.597282
Target:  5'- uGCAGCGuGUGGCGGUgucccugcuGGCcuucguCCGCgucGGCc -3'
miRNA:   3'- -CGUCGC-CGCCGCCG---------UCGcu----GGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 138588 0.66 0.597282
Target:  5'- -aGGCGcGuCGGC-GCGGCGGagaGCGGCu -3'
miRNA:   3'- cgUCGC-C-GCCGcCGUCGCUgg-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 48223 0.66 0.606723
Target:  5'- gGCAGagcaGGCGGCcGCcaucguuCGGCCGCaGCa -3'
miRNA:   3'- -CGUCg---CCGCCGcCGuc-----GCUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 58543 0.66 0.597282
Target:  5'- cGCcGCGGCGcGCGcGCuGCuGGCgCGCuGCg -3'
miRNA:   3'- -CGuCGCCGC-CGC-CGuCG-CUG-GCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 117369 0.66 0.606723
Target:  5'- aGCGGCGGgccgccugcaCGGUcGCGGCGAa-GCGGg -3'
miRNA:   3'- -CGUCGCC----------GCCGcCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 134197 0.66 0.606723
Target:  5'- uCGGCuGGUGGgGGCcgucggucgccaAGCGACCGCc-- -3'
miRNA:   3'- cGUCG-CCGCCgCCG------------UCGCUGGCGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.