miRNA display CGI


Results 61 - 80 of 383 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 48223 0.66 0.606723
Target:  5'- gGCAGagcaGGCGGCcGCcaucguuCGGCCGCaGCa -3'
miRNA:   3'- -CGUCg---CCGCCGcCGuc-----GCUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 138588 0.66 0.597282
Target:  5'- -aGGCGcGuCGGC-GCGGCGGagaGCGGCu -3'
miRNA:   3'- cgUCGC-C-GCCGcCGUCGCUgg-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 149744 0.66 0.587864
Target:  5'- cCGGUGGa-GCGGCGG-GACCGCugucucGGCc -3'
miRNA:   3'- cGUCGCCgcCGCCGUCgCUGGCG------CCG- -5'
10887 3' -64.7 NC_002794.1 + 117081 0.66 0.587864
Target:  5'- aCGGCGGCaGCGGC-GUGuCCacuuCGGCc -3'
miRNA:   3'- cGUCGCCGcCGCCGuCGCuGGc---GCCG- -5'
10887 3' -64.7 NC_002794.1 + 131022 0.66 0.587864
Target:  5'- uCGGUGGuCGuGCGGC-GCGGCCgGCuGCc -3'
miRNA:   3'- cGUCGCC-GC-CGCCGuCGCUGG-CGcCG- -5'
10887 3' -64.7 NC_002794.1 + 120515 0.66 0.587864
Target:  5'- gGCAGCcugcaGGCGGUGGCccccgGGCuGACCaGCcuGGUc -3'
miRNA:   3'- -CGUCG-----CCGCCGCCG-----UCG-CUGG-CG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 20391 0.66 0.578473
Target:  5'- --cGCGGU-GCGGCGG-GACCGgGaGCg -3'
miRNA:   3'- cguCGCCGcCGCCGUCgCUGGCgC-CG- -5'
10887 3' -64.7 NC_002794.1 + 128277 0.66 0.582226
Target:  5'- aGC-GCGGagccgaCGGCcGUcuucgacaccgagacGGCGACCGUGGCg -3'
miRNA:   3'- -CGuCGCC------GCCGcCG---------------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 76789 0.66 0.587864
Target:  5'- -gAGCcgGGCgGGCGaGCGGCGACCacCGGa -3'
miRNA:   3'- cgUCG--CCG-CCGC-CGUCGCUGGc-GCCg -5'
10887 3' -64.7 NC_002794.1 + 89530 0.66 0.578473
Target:  5'- -gAGuCGGCGGaGGCAGCaGACgCGaCGGa -3'
miRNA:   3'- cgUC-GCCGCCgCCGUCG-CUG-GC-GCCg -5'
10887 3' -64.7 NC_002794.1 + 86993 0.66 0.587864
Target:  5'- cCGGCGGCuuucGGCGGCguggguuccGGCGAggguCCGCaGGa -3'
miRNA:   3'- cGUCGCCG----CCGCCG---------UCGCU----GGCG-CCg -5'
10887 3' -64.7 NC_002794.1 + 187358 0.66 0.587864
Target:  5'- cGCGGUcacguaGGCGcGCaGCAGCuccgccGAcCCGUGGCa -3'
miRNA:   3'- -CGUCG------CCGC-CGcCGUCG------CU-GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 147976 0.66 0.597282
Target:  5'- uGCAGCGuGUGGCGGUgucccugcuGGCcuucguCCGCgucGGCc -3'
miRNA:   3'- -CGUCGC-CGCCGCCG---------UCGcu----GGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 136615 0.66 0.597282
Target:  5'- aGCGuguGCaGGUGGgucUGGCAGCGGCUcaGgGGCa -3'
miRNA:   3'- -CGU---CG-CCGCC---GCCGUCGCUGG--CgCCG- -5'
10887 3' -64.7 NC_002794.1 + 13340 0.66 0.597282
Target:  5'- cCGGuCGGgGGUGGCGGCGccccUCGCccgGGCc -3'
miRNA:   3'- cGUC-GCCgCCGCCGUCGCu---GGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 49051 0.66 0.597282
Target:  5'- uCAGCGuccagGGCGcGCAGCacGACuCGCGGUa -3'
miRNA:   3'- cGUCGCcg---CCGC-CGUCG--CUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 11642 0.66 0.597282
Target:  5'- aCAGCGaCgGGCGGCcGaCGA-CGCGGCc -3'
miRNA:   3'- cGUCGCcG-CCGCCGuC-GCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142717 0.66 0.597282
Target:  5'- aGUGGUGGUGGgGGUcGCGGuaaCGCaGGCc -3'
miRNA:   3'- -CGUCGCCGCCgCCGuCGCUg--GCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 117671 0.66 0.594454
Target:  5'- cGCGGCGGCgcguacugcacguaGGCcucGCAcgccGCGACggCGUGGCa -3'
miRNA:   3'- -CGUCGCCG--------------CCGc--CGU----CGCUG--GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 40545 0.66 0.594454
Target:  5'- -aGGgGGcCGGCGGCAugagcuucucguucGCGccguccugGCCGCGGg -3'
miRNA:   3'- cgUCgCC-GCCGCCGU--------------CGC--------UGGCGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.