Results 101 - 120 of 383 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 185552 | 0.67 | 0.557007 |
Target: 5'- cCGGCcGCGcgccccgcccugccGCGGCAG-GGCgCGCGGCu -3' miRNA: 3'- cGUCGcCGC--------------CGCCGUCgCUG-GCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 53273 | 0.67 | 0.557007 |
Target: 5'- aCAaCGG-GGCGGCgAGCGACCacuccaggugccgaGCGGUc -3' miRNA: 3'- cGUcGCCgCCGCCG-UCGCUGG--------------CGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 146327 | 0.67 | 0.554223 |
Target: 5'- cGC-GCGGCGGauuCGaccccgucgucgaucGCGGCGGCCGCccgGGUa -3' miRNA: 3'- -CGuCGCCGCC---GC---------------CGUCGCUGGCG---CCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 143280 | 0.67 | 0.550518 |
Target: 5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3' miRNA: 3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 116907 | 0.67 | 0.550518 |
Target: 5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3' miRNA: 3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 112544 | 0.66 | 0.569115 |
Target: 5'- aGUAGCGGUaGCGG-GGCucGCCGcCGGCc -3' miRNA: 3'- -CGUCGCCGcCGCCgUCGc-UGGC-GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 3763 | 0.66 | 0.569115 |
Target: 5'- gGCGG-GGCGGgGG-AGUGACUcaGCGGg -3' miRNA: 3'- -CGUCgCCGCCgCCgUCGCUGG--CGCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 149744 | 0.66 | 0.587864 |
Target: 5'- cCGGUGGa-GCGGCGG-GACCGCugucucGGCc -3' miRNA: 3'- cGUCGCCgcCGCCGUCgCUGGCG------CCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 117081 | 0.66 | 0.587864 |
Target: 5'- aCGGCGGCaGCGGC-GUGuCCacuuCGGCc -3' miRNA: 3'- cGUCGCCGcCGCCGuCGCuGGc---GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 131022 | 0.66 | 0.587864 |
Target: 5'- uCGGUGGuCGuGCGGC-GCGGCCgGCuGCc -3' miRNA: 3'- cGUCGCC-GC-CGCCGuCGCUGG-CGcCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 120515 | 0.66 | 0.587864 |
Target: 5'- gGCAGCcugcaGGCGGUGGCccccgGGCuGACCaGCcuGGUc -3' miRNA: 3'- -CGUCG-----CCGCCGCCG-----UCG-CUGG-CG--CCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 20391 | 0.66 | 0.578473 |
Target: 5'- --cGCGGU-GCGGCGG-GACCGgGaGCg -3' miRNA: 3'- cguCGCCGcCGCCGUCgCUGGCgC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 128277 | 0.66 | 0.582226 |
Target: 5'- aGC-GCGGagccgaCGGCcGUcuucgacaccgagacGGCGACCGUGGCg -3' miRNA: 3'- -CGuCGCC------GCCGcCG---------------UCGCUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 76789 | 0.66 | 0.587864 |
Target: 5'- -gAGCcgGGCgGGCGaGCGGCGACCacCGGa -3' miRNA: 3'- cgUCG--CCG-CCGC-CGUCGCUGGc-GCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 89530 | 0.66 | 0.578473 |
Target: 5'- -gAGuCGGCGGaGGCAGCaGACgCGaCGGa -3' miRNA: 3'- cgUC-GCCGCCgCCGUCG-CUG-GC-GCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 44555 | 0.66 | 0.575662 |
Target: 5'- cCGGCGGCGGCGcccguugacgucacGCGG-GACCGa-GCc -3' miRNA: 3'- cGUCGCCGCCGC--------------CGUCgCUGGCgcCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 184481 | 0.66 | 0.569115 |
Target: 5'- aCGGCGcGCGG-GGCcccggacgcccgGGCGGCgcgggccccgcgCGCGGCg -3' miRNA: 3'- cGUCGC-CGCCgCCG------------UCGCUG------------GCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 101511 | 0.66 | 0.569115 |
Target: 5'- cGguGCGGCacacGcCGGCGGgGugCcCGGCg -3' miRNA: 3'- -CguCGCCGc---C-GCCGUCgCugGcGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 108312 | 0.66 | 0.569115 |
Target: 5'- uGCGcCGGCGGUGGgucuuG-GACgGCGGCg -3' miRNA: 3'- -CGUcGCCGCCGCCgu---CgCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 184813 | 0.66 | 0.569115 |
Target: 5'- aGCAGCGucaCGG-GGCAcGCGuCCG-GGCg -3' miRNA: 3'- -CGUCGCc--GCCgCCGU-CGCuGGCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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