miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 193934 0.66 0.930344
Target:  5'- gCCACcGcCGGCuccgGCCC-CGCCGCcACCGc -3'
miRNA:   3'- -GGUGuC-GCUG----UGGGaGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 50662 0.66 0.930344
Target:  5'- aCAUGGCGGCcgcgGCgCUCGCCGCgaaucgAUCGa -3'
miRNA:   3'- gGUGUCGCUG----UGgGAGCGGUGa-----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 81882 0.66 0.930344
Target:  5'- cUCugGGCcACGCUCUggaGCCGCUGCUu -3'
miRNA:   3'- -GGugUCGcUGUGGGAg--CGGUGAUGGu -5'
10887 5' -56.9 NC_002794.1 + 66746 0.66 0.930344
Target:  5'- -gGCGGCGGCGCgUaCGaCCGCUggACCAg -3'
miRNA:   3'- ggUGUCGCUGUGgGaGC-GGUGA--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 152581 0.66 0.930344
Target:  5'- gCCGCGGCGGCcgccacguCCCUgCGgCGCggGCCc -3'
miRNA:   3'- -GGUGUCGCUGu-------GGGA-GCgGUGa-UGGu -5'
10887 5' -56.9 NC_002794.1 + 74104 0.66 0.925205
Target:  5'- gCUGCGGCugcuCACCCUCgagcagGCCGCcGCCGc -3'
miRNA:   3'- -GGUGUCGcu--GUGGGAG------CGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 58131 0.66 0.925205
Target:  5'- cCCugGGCGGCcugGCCCgcCGCCucgugcacuuUUACCAg -3'
miRNA:   3'- -GGugUCGCUG---UGGGa-GCGGu---------GAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 189837 0.66 0.925205
Target:  5'- gCCACAGCGGgGuCUCg-GCCGCggaGCCGu -3'
miRNA:   3'- -GGUGUCGCUgU-GGGagCGGUGa--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 66858 0.66 0.925205
Target:  5'- gCGCGGCGAgGCCgCggcgUGCgGCUgaGCCAu -3'
miRNA:   3'- gGUGUCGCUgUGG-Ga---GCGgUGA--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 67858 0.66 0.925205
Target:  5'- gCCGC-GCGuCACCCggCGCCAUc-CCGa -3'
miRNA:   3'- -GGUGuCGCuGUGGGa-GCGGUGauGGU- -5'
10887 5' -56.9 NC_002794.1 + 96301 0.66 0.925205
Target:  5'- aCAUGGCGuACGCCUgcgacaaCGCCggcauGCUGCCGc -3'
miRNA:   3'- gGUGUCGC-UGUGGGa------GCGG-----UGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 149705 0.66 0.925205
Target:  5'- gCCGCcuGGCGGgugggccgcCugCCUCGCUACggcgUGCCGg -3'
miRNA:   3'- -GGUG--UCGCU---------GugGGAGCGGUG----AUGGU- -5'
10887 5' -56.9 NC_002794.1 + 184183 0.66 0.925205
Target:  5'- aCACcGCGGCGCCCggCGaggcCCGCUcCCGc -3'
miRNA:   3'- gGUGuCGCUGUGGGa-GC----GGUGAuGGU- -5'
10887 5' -56.9 NC_002794.1 + 186710 0.66 0.925205
Target:  5'- -gGCGGUGAagaGCCCgUCGCUGCUAUa- -3'
miRNA:   3'- ggUGUCGCUg--UGGG-AGCGGUGAUGgu -5'
10887 5' -56.9 NC_002794.1 + 187539 0.66 0.925205
Target:  5'- gCCGCcGCGAC-CgC-CGCCACcGCCGc -3'
miRNA:   3'- -GGUGuCGCUGuGgGaGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 52595 0.66 0.923619
Target:  5'- aCGCAGCcgacguccgcccgaGACGCCCgccCGaCCGCcGCCGc -3'
miRNA:   3'- gGUGUCG--------------CUGUGGGa--GC-GGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 90108 0.66 0.919839
Target:  5'- gCCGCGGUgGGCGCCgUgaGUCugUACCGc -3'
miRNA:   3'- -GGUGUCG-CUGUGGgAg-CGGugAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 184577 0.66 0.919839
Target:  5'- gCCGCGGCGGCGgCg--GCCACgcgcgGCCGc -3'
miRNA:   3'- -GGUGUCGCUGUgGgagCGGUGa----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 190161 0.66 0.919839
Target:  5'- -gGCGGCGgcucuccucgaACACCCgccgCGCCACcuCCAc -3'
miRNA:   3'- ggUGUCGC-----------UGUGGGa---GCGGUGauGGU- -5'
10887 5' -56.9 NC_002794.1 + 69801 0.66 0.919839
Target:  5'- gCCGCcGCGuaGCCCgcCGCCGCgACCGg -3'
miRNA:   3'- -GGUGuCGCugUGGGa-GCGGUGaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.