miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 21016 1.1 0.002969
Target:  5'- gCCACAGCGACACCCUCGCCACUACCAc -3'
miRNA:   3'- -GGUGUCGCUGUGGGAGCGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 56726 0.84 0.154815
Target:  5'- aCUACGGCGACgACCCgaGCCGCUACCAc -3'
miRNA:   3'- -GGUGUCGCUG-UGGGagCGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 191681 0.79 0.301666
Target:  5'- gCgGCGGCGGCguGCCCUCGUCGCggACCAc -3'
miRNA:   3'- -GgUGUCGCUG--UGGGAGCGGUGa-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 59315 0.78 0.308516
Target:  5'- gCCACGGCG-CGCCCgacuUCGCCGCccGCCAc -3'
miRNA:   3'- -GGUGUCGCuGUGGG----AGCGGUGa-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 75655 0.78 0.315485
Target:  5'- gCgGCAGCGGCGCCgUcCGCCGCUACa- -3'
miRNA:   3'- -GgUGUCGCUGUGGgA-GCGGUGAUGgu -5'
10887 5' -56.9 NC_002794.1 + 12726 0.78 0.315485
Target:  5'- uCCGCGGCGACgaggGCCCgguCCGCUACCAg -3'
miRNA:   3'- -GGUGUCGCUG----UGGGagcGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 6300 0.78 0.344537
Target:  5'- aCCAuCAGCGugACCCUgGCCACU-CUg -3'
miRNA:   3'- -GGU-GUCGCugUGGGAgCGGUGAuGGu -5'
10887 5' -56.9 NC_002794.1 + 38497 0.77 0.359769
Target:  5'- gCGCGGCGGCGCCggUCGCCGCcGCCu -3'
miRNA:   3'- gGUGUCGCUGUGGg-AGCGGUGaUGGu -5'
10887 5' -56.9 NC_002794.1 + 92602 0.77 0.367559
Target:  5'- aCGCGGUGGCcUUCUCGCCGCUGCUg -3'
miRNA:   3'- gGUGUCGCUGuGGGAGCGGUGAUGGu -5'
10887 5' -56.9 NC_002794.1 + 194145 0.76 0.391616
Target:  5'- gCCGCAGCaGCGCCCgcgaGCC-CUGCCGg -3'
miRNA:   3'- -GGUGUCGcUGUGGGag--CGGuGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 48160 0.76 0.416675
Target:  5'- -gGCAGCGGCGCCgCUucaCGCCGCUGCa- -3'
miRNA:   3'- ggUGUCGCUGUGG-GA---GCGGUGAUGgu -5'
10887 5' -56.9 NC_002794.1 + 14506 0.75 0.44269
Target:  5'- cCCGCGcucGCGGCGCUCguggCGCCGCUcgGCCAc -3'
miRNA:   3'- -GGUGU---CGCUGUGGGa---GCGGUGA--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 79004 0.75 0.460534
Target:  5'- gUCGCGGCGACuccaucccGCCCUCGgCCGCcuucUGCCGg -3'
miRNA:   3'- -GGUGUCGCUG--------UGGGAGC-GGUG----AUGGU- -5'
10887 5' -56.9 NC_002794.1 + 52901 0.74 0.497315
Target:  5'- aCGCGGCGccgcCGCCgUCGCCGCcGCCGu -3'
miRNA:   3'- gGUGUCGCu---GUGGgAGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 44555 0.74 0.535358
Target:  5'- cCgGCGGCGGCGCCCguugaCGUCACgcgggACCGa -3'
miRNA:   3'- -GgUGUCGCUGUGGGa----GCGGUGa----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 34815 0.73 0.545034
Target:  5'- gCCGC-GCGACAccaccCCCUCGCCGgcGCCGg -3'
miRNA:   3'- -GGUGuCGCUGU-----GGGAGCGGUgaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 114035 0.73 0.545034
Target:  5'- -gGCAGCGGcCGCCCguagUCGCCGCgcACCAg -3'
miRNA:   3'- ggUGUCGCU-GUGGG----AGCGGUGa-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 93021 0.73 0.564546
Target:  5'- -uGCAGCGGCggaACCCggugCGCgGCUGCCu -3'
miRNA:   3'- ggUGUCGCUG---UGGGa---GCGgUGAUGGu -5'
10887 5' -56.9 NC_002794.1 + 105906 0.73 0.574372
Target:  5'- gCCGCGGCGGCGgCgCUacCGCCGCcGCCGg -3'
miRNA:   3'- -GGUGUCGCUGUgG-GA--GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 59552 0.73 0.574372
Target:  5'- aCCGcCAGUGGCACCgCUCGCCcuucucgcGCUACa- -3'
miRNA:   3'- -GGU-GUCGCUGUGG-GAGCGG--------UGAUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.