miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 190509 0.73 0.584237
Target:  5'- aCCACGGCG-UGCCCa-GCCGCgUGCCGa -3'
miRNA:   3'- -GGUGUCGCuGUGGGagCGGUG-AUGGU- -5'
10887 5' -56.9 NC_002794.1 + 78109 0.73 0.584237
Target:  5'- aCGCGGCGGCGCCUccagaCGCCGCccgaGCCGc -3'
miRNA:   3'- gGUGUCGCUGUGGGa----GCGGUGa---UGGU- -5'
10887 5' -56.9 NC_002794.1 + 185911 0.73 0.594135
Target:  5'- uCCACcG-GGC-CCCUCGCCACcGCCGg -3'
miRNA:   3'- -GGUGuCgCUGuGGGAGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194060 0.73 0.594135
Target:  5'- gCCGCcgagAGCGcCGCCUUCGUCGCcGCCAc -3'
miRNA:   3'- -GGUG----UCGCuGUGGGAGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 60261 0.72 0.604059
Target:  5'- cCCaACGGCcACACCUUCGCCAgcACCGu -3'
miRNA:   3'- -GG-UGUCGcUGUGGGAGCGGUgaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 118179 0.72 0.604059
Target:  5'- -gGCGGCGACGCgCCgaccuuccgUCGCCGCcGCCGu -3'
miRNA:   3'- ggUGUCGCUGUG-GG---------AGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194819 0.72 0.614003
Target:  5'- gCCGCAGCGACGCgCgCUCGCgGC--CCGg -3'
miRNA:   3'- -GGUGUCGCUGUG-G-GAGCGgUGauGGU- -5'
10887 5' -56.9 NC_002794.1 + 80388 0.72 0.614003
Target:  5'- cCCGCcGCGACuACCuaCUCGCCGCgGCCc -3'
miRNA:   3'- -GGUGuCGCUG-UGG--GAGCGGUGaUGGu -5'
10887 5' -56.9 NC_002794.1 + 152839 0.72 0.633923
Target:  5'- gCGuCAGCGACGCCUaCGCgCugUACCu -3'
miRNA:   3'- gGU-GUCGCUGUGGGaGCG-GugAUGGu -5'
10887 5' -56.9 NC_002794.1 + 127223 0.72 0.633923
Target:  5'- aCCcCAGCaGGCGCCC-CGCUACacgGCCAc -3'
miRNA:   3'- -GGuGUCG-CUGUGGGaGCGGUGa--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 113187 0.72 0.633923
Target:  5'- gUCGCGGaGGCGCCUcCGCCGCcGCCAc -3'
miRNA:   3'- -GGUGUCgCUGUGGGaGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 82723 0.71 0.663773
Target:  5'- aCGCcGCGcCACCaCUCGCCGCgaGCCGc -3'
miRNA:   3'- gGUGuCGCuGUGG-GAGCGGUGa-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 114342 0.71 0.673685
Target:  5'- gCCGCAGCGGCucguCCgC-CGCCAggGCCGg -3'
miRNA:   3'- -GGUGUCGCUGu---GG-GaGCGGUgaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 17628 0.71 0.683565
Target:  5'- gCCGCGGCGAgCGauCCCgcCGCCGCgGCCGc -3'
miRNA:   3'- -GGUGUCGCU-GU--GGGa-GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 195533 0.71 0.683565
Target:  5'- cCCACGGCGgacgccGCACCCaCGCC-CUgaGCCGc -3'
miRNA:   3'- -GGUGUCGC------UGUGGGaGCGGuGA--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 125341 0.71 0.693404
Target:  5'- gCCACGGCG-CACCggcaGCCGCUgGCCGu -3'
miRNA:   3'- -GGUGUCGCuGUGGgag-CGGUGA-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 149253 0.71 0.703196
Target:  5'- gUCGCGGCGccacCACCCUCGUCcCcGCCGg -3'
miRNA:   3'- -GGUGUCGCu---GUGGGAGCGGuGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 186347 0.71 0.703196
Target:  5'- gCgGCGGCGACguGCCCgaccagcCGCCGCcGCCGc -3'
miRNA:   3'- -GgUGUCGCUG--UGGGa------GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 59887 0.71 0.703196
Target:  5'- gCACGGCG-CACCUgCGCCGCgUGCgCAg -3'
miRNA:   3'- gGUGUCGCuGUGGGaGCGGUG-AUG-GU- -5'
10887 5' -56.9 NC_002794.1 + 56903 0.71 0.71293
Target:  5'- gCCGC-GCGugGCCaCgggCGCCggGCUGCCGg -3'
miRNA:   3'- -GGUGuCGCugUGG-Ga--GCGG--UGAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.