miRNA display CGI


Results 21 - 40 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 190161 0.66 0.919839
Target:  5'- -gGCGGCGgcucuccucgaACACCCgccgCGCCACcuCCAc -3'
miRNA:   3'- ggUGUCGC-----------UGUGGGa---GCGGUGauGGU- -5'
10887 5' -56.9 NC_002794.1 + 184577 0.66 0.919839
Target:  5'- gCCGCGGCGGCGgCg--GCCACgcgcgGCCGc -3'
miRNA:   3'- -GGUGUCGCUGUgGgagCGGUGa----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 90108 0.66 0.919839
Target:  5'- gCCGCGGUgGGCGCCgUgaGUCugUACCGc -3'
miRNA:   3'- -GGUGUCG-CUGUGGgAg-CGGugAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 189914 0.66 0.919839
Target:  5'- gCCGC-GCGAcCGCCCgcUCGCCcgACgGCCGc -3'
miRNA:   3'- -GGUGuCGCU-GUGGG--AGCGG--UGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 19405 0.66 0.91929
Target:  5'- cCCACccgacccggaucgGGCG-CGCCCUCcuCCGCgACCAg -3'
miRNA:   3'- -GGUG-------------UCGCuGUGGGAGc-GGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 80012 0.66 0.916511
Target:  5'- -gACGGCGACgaggaggccggggagACCaCUCGCCGacagUGCCGg -3'
miRNA:   3'- ggUGUCGCUG---------------UGG-GAGCGGUg---AUGGU- -5'
10887 5' -56.9 NC_002794.1 + 82319 0.66 0.914817
Target:  5'- uCCACcGC-ACACCCgccgugaccuucgagCGCCAC-GCCAa -3'
miRNA:   3'- -GGUGuCGcUGUGGGa--------------GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 53419 0.66 0.914247
Target:  5'- -aACAGCGGCccgcucucgcucGCCCUC-CCGCUcuCCAc -3'
miRNA:   3'- ggUGUCGCUG------------UGGGAGcGGUGAu-GGU- -5'
10887 5' -56.9 NC_002794.1 + 54839 0.66 0.914247
Target:  5'- --uCGGCGGCACCCaaCGCC-CguagGCCGg -3'
miRNA:   3'- gguGUCGCUGUGGGa-GCGGuGa---UGGU- -5'
10887 5' -56.9 NC_002794.1 + 152300 0.66 0.914247
Target:  5'- aCCcCGGCGG-GCUCUCGC-ACUACCu -3'
miRNA:   3'- -GGuGUCGCUgUGGGAGCGgUGAUGGu -5'
10887 5' -56.9 NC_002794.1 + 192041 0.66 0.914247
Target:  5'- gCgGCGGCGGCugCUgcuGCUGCUGCUg -3'
miRNA:   3'- -GgUGUCGCUGugGGag-CGGUGAUGGu -5'
10887 5' -56.9 NC_002794.1 + 34333 0.66 0.914247
Target:  5'- uCCGCAagGCGACGgCCgCGCCGuuccgcccgcuCUACCu -3'
miRNA:   3'- -GGUGU--CGCUGUgGGaGCGGU-----------GAUGGu -5'
10887 5' -56.9 NC_002794.1 + 195311 0.66 0.914247
Target:  5'- aCCGCcGCGuCGCCUUCGCCGaguagugGCUc -3'
miRNA:   3'- -GGUGuCGCuGUGGGAGCGGUga-----UGGu -5'
10887 5' -56.9 NC_002794.1 + 194793 0.66 0.914247
Target:  5'- gCGCAGCGGCuCCCagUGCC-CcACCAn -3'
miRNA:   3'- gGUGUCGCUGuGGGa-GCGGuGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194759 0.66 0.914247
Target:  5'- cCCACGGCGACugCUcCGagaACgGCCGg -3'
miRNA:   3'- -GGUGUCGCUGugGGaGCgg-UGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 146354 0.66 0.914247
Target:  5'- aUCGCGGCGGcCGCCCggguagcCGuCCGCUcguCCAg -3'
miRNA:   3'- -GGUGUCGCU-GUGGGa------GC-GGUGAu--GGU- -5'
10887 5' -56.9 NC_002794.1 + 185069 0.66 0.913676
Target:  5'- gCCGCcGCGGC-CCgUCGCCguagcagGCgUACCAg -3'
miRNA:   3'- -GGUGuCGCUGuGGgAGCGG-------UG-AUGGU- -5'
10887 5' -56.9 NC_002794.1 + 150019 0.66 0.909022
Target:  5'- cCCGCucCGAgACCCggccgccgaguggaGCCGCUACCGa -3'
miRNA:   3'- -GGUGucGCUgUGGGag------------CGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 81957 0.66 0.90843
Target:  5'- gCCAUcGCGGCGCCCgC-CCGCUucCCGg -3'
miRNA:   3'- -GGUGuCGCUGUGGGaGcGGUGAu-GGU- -5'
10887 5' -56.9 NC_002794.1 + 55528 0.66 0.90843
Target:  5'- gCC-CGGCGGC-CCCgUCGCC-CUcCCGu -3'
miRNA:   3'- -GGuGUCGCUGuGGG-AGCGGuGAuGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.