miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 378 0.67 0.868939
Target:  5'- gCCGC-GCGAUcCCCg-GCaCGCUGCCAc -3'
miRNA:   3'- -GGUGuCGCUGuGGGagCG-GUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 6300 0.78 0.344537
Target:  5'- aCCAuCAGCGugACCCUgGCCACU-CUg -3'
miRNA:   3'- -GGU-GUCGCugUGGGAgCGGUGAuGGu -5'
10887 5' -56.9 NC_002794.1 + 6940 0.69 0.813842
Target:  5'- gCCGC-GCGGCACCCUCucggucucggGCuCGCUcCCGc -3'
miRNA:   3'- -GGUGuCGCUGUGGGAG----------CG-GUGAuGGU- -5'
10887 5' -56.9 NC_002794.1 + 9920 0.66 0.90239
Target:  5'- gCACAGgGACGCCCccagagagaUCGaCCACaacggcACCAc -3'
miRNA:   3'- gGUGUCgCUGUGGG---------AGC-GGUGa-----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 12726 0.78 0.315485
Target:  5'- uCCGCGGCGACgaggGCCCgguCCGCUACCAg -3'
miRNA:   3'- -GGUGUCGCUG----UGGGagcGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 13351 0.66 0.90239
Target:  5'- ---uGGCGGCGcCCCUCGCCcggGCCc -3'
miRNA:   3'- ggugUCGCUGU-GGGAGCGGugaUGGu -5'
10887 5' -56.9 NC_002794.1 + 13746 0.67 0.896129
Target:  5'- cCCGgcCGGcCGACACCagaCUCGCCGCcccggaGCCAc -3'
miRNA:   3'- -GGU--GUC-GCUGUGG---GAGCGGUGa-----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 14506 0.75 0.44269
Target:  5'- cCCGCGcucGCGGCGCUCguggCGCCGCUcgGCCAc -3'
miRNA:   3'- -GGUGU---CGCUGUGGGa---GCGGUGA--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 15208 0.67 0.876051
Target:  5'- cCCGCgauGGCGGCGuCCCcCGUCcgcggGCUGCCGg -3'
miRNA:   3'- -GGUG---UCGCUGU-GGGaGCGG-----UGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 16548 0.68 0.846417
Target:  5'- cCC-CGGCGuCGCCaC-CGCCACcGCCGc -3'
miRNA:   3'- -GGuGUCGCuGUGG-GaGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 17201 0.66 0.90239
Target:  5'- gUACGaCGACACCgC-CGCCGCcACCAc -3'
miRNA:   3'- gGUGUcGCUGUGG-GaGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 17255 0.69 0.787745
Target:  5'- aCgGCGGCGACccggcucgucACCCgggcaCGCCGCcGCCGa -3'
miRNA:   3'- -GgUGUCGCUG----------UGGGa----GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 17628 0.71 0.683565
Target:  5'- gCCGCGGCGAgCGauCCCgcCGCCGCgGCCGc -3'
miRNA:   3'- -GGUGUCGCU-GU--GGGa-GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 18640 0.68 0.854117
Target:  5'- cCCGCuccGcCGGCACCCgggacgaccgUCGCCGCUuCCu -3'
miRNA:   3'- -GGUGu--C-GCUGUGGG----------AGCGGUGAuGGu -5'
10887 5' -56.9 NC_002794.1 + 19405 0.66 0.91929
Target:  5'- cCCACccgacccggaucgGGCG-CGCCCUCcuCCGCgACCAg -3'
miRNA:   3'- -GGUG-------------UCGCuGUGGGAGc-GGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 21016 1.1 0.002969
Target:  5'- gCCACAGCGACACCCUCGCCACUACCAc -3'
miRNA:   3'- -GGUGUCGCUGUGGGAGCGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 28674 0.7 0.732195
Target:  5'- aCCGCcGCcgGugGCCgUCGCCGCcGCCGu -3'
miRNA:   3'- -GGUGuCG--CugUGGgAGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 32303 0.7 0.722599
Target:  5'- gCCGCGGCGGcCGCgCCg-GCCGCgGCCGg -3'
miRNA:   3'- -GGUGUCGCU-GUG-GGagCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 33462 0.67 0.882956
Target:  5'- gCCGcCGGaCG-CGCCCaCGCCGCUGCa- -3'
miRNA:   3'- -GGU-GUC-GCuGUGGGaGCGGUGAUGgu -5'
10887 5' -56.9 NC_002794.1 + 34333 0.66 0.914247
Target:  5'- uCCGCAagGCGACGgCCgCGCCGuuccgcccgcuCUACCu -3'
miRNA:   3'- -GGUGU--CGCUGUgGGaGCGGU-----------GAUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.