miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 34815 0.73 0.545034
Target:  5'- gCCGC-GCGACAccaccCCCUCGCCGgcGCCGg -3'
miRNA:   3'- -GGUGuCGCUGU-----GGGAGCGGUgaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 38497 0.77 0.359769
Target:  5'- gCGCGGCGGCGCCggUCGCCGCcGCCu -3'
miRNA:   3'- gGUGUCGCUGUGGg-AGCGGUGaUGGu -5'
10887 5' -56.9 NC_002794.1 + 44555 0.74 0.535358
Target:  5'- cCgGCGGCGGCGCCCguugaCGUCACgcgggACCGa -3'
miRNA:   3'- -GgUGUCGCUGUGGGa----GCGGUGa----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 44676 0.67 0.882956
Target:  5'- uCCGCAGCGccaucguccAgACCCacCGCCGCccgGCCGc -3'
miRNA:   3'- -GGUGUCGC---------UgUGGGa-GCGGUGa--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 44717 0.7 0.760454
Target:  5'- aCCGCGGCGACgucgGCCggCGCCGCcggaggGCUAa -3'
miRNA:   3'- -GGUGUCGCUG----UGGgaGCGGUGa-----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 46174 0.67 0.873231
Target:  5'- gCACAGCGccgccgagaccccgGCACCgcgcucgCUCGCCGCcguuccgGCCAg -3'
miRNA:   3'- gGUGUCGC--------------UGUGG-------GAGCGGUGa------UGGU- -5'
10887 5' -56.9 NC_002794.1 + 46317 0.7 0.741708
Target:  5'- gCgGCGGCGACggcGCCgUCGCCGCggacggcuCCAu -3'
miRNA:   3'- -GgUGUCGCUG---UGGgAGCGGUGau------GGU- -5'
10887 5' -56.9 NC_002794.1 + 48160 0.76 0.416675
Target:  5'- -gGCAGCGGCGCCgCUucaCGCCGCUGCa- -3'
miRNA:   3'- ggUGUCGCUGUGG-GA---GCGGUGAUGgu -5'
10887 5' -56.9 NC_002794.1 + 49647 0.66 0.919839
Target:  5'- aCCGuCGGCGAguCCCgCGCCG--ACCGg -3'
miRNA:   3'- -GGU-GUCGCUguGGGaGCGGUgaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 50662 0.66 0.930344
Target:  5'- aCAUGGCGGCcgcgGCgCUCGCCGCgaaucgAUCGa -3'
miRNA:   3'- gGUGUCGCUG----UGgGAGCGGUGa-----UGGU- -5'
10887 5' -56.9 NC_002794.1 + 51979 0.7 0.732195
Target:  5'- gCAUcGUGGCGCUCg-GCCGCUACCGa -3'
miRNA:   3'- gGUGuCGCUGUGGGagCGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 52595 0.66 0.923619
Target:  5'- aCGCAGCcgacguccgcccgaGACGCCCgccCGaCCGCcGCCGc -3'
miRNA:   3'- gGUGUCG--------------CUGUGGGa--GC-GGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 52901 0.74 0.497315
Target:  5'- aCGCGGCGccgcCGCCgUCGCCGCcGCCGu -3'
miRNA:   3'- gGUGUCGCu---GUGGgAGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 53419 0.66 0.914247
Target:  5'- -aACAGCGGCccgcucucgcucGCCCUC-CCGCUcuCCAc -3'
miRNA:   3'- ggUGUCGCUG------------UGGGAGcGGUGAu-GGU- -5'
10887 5' -56.9 NC_002794.1 + 53732 0.67 0.868939
Target:  5'- cCCGCGccaucgccggccGCcGCugCCgcCGCCGCUGCCGg -3'
miRNA:   3'- -GGUGU------------CGcUGugGGa-GCGGUGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 53919 0.66 0.90239
Target:  5'- gCCGuCGGCGGCGCCgccgaaccgagCUCGCaGCcGCCAc -3'
miRNA:   3'- -GGU-GUCGCUGUGG-----------GAGCGgUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 54839 0.66 0.914247
Target:  5'- --uCGGCGGCACCCaaCGCC-CguagGCCGg -3'
miRNA:   3'- gguGUCGCUGUGGGa-GCGGuGa---UGGU- -5'
10887 5' -56.9 NC_002794.1 + 54988 0.67 0.882956
Target:  5'- gCCGCGGCGACGgCggcgaCUCGCCggGCguccGCCGc -3'
miRNA:   3'- -GGUGUCGCUGUgG-----GAGCGG--UGa---UGGU- -5'
10887 5' -56.9 NC_002794.1 + 55528 0.66 0.90843
Target:  5'- gCC-CGGCGGC-CCCgUCGCC-CUcCCGu -3'
miRNA:   3'- -GGuGUCGCUGuGGG-AGCGGuGAuGGU- -5'
10887 5' -56.9 NC_002794.1 + 56582 0.69 0.76967
Target:  5'- cCCGCGccGCGGCGCCC--GCCGCcgGCCu -3'
miRNA:   3'- -GGUGU--CGCUGUGGGagCGGUGa-UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.