miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 5' -56.9 NC_002794.1 + 195533 0.71 0.683565
Target:  5'- cCCACGGCGgacgccGCACCCaCGCC-CUgaGCCGc -3'
miRNA:   3'- -GGUGUCGC------UGUGGGaGCGGuGA--UGGU- -5'
10887 5' -56.9 NC_002794.1 + 195456 0.67 0.868939
Target:  5'- cCCACAcCGACGCCC-CGCU--UGCCc -3'
miRNA:   3'- -GGUGUcGCUGUGGGaGCGGugAUGGu -5'
10887 5' -56.9 NC_002794.1 + 195398 0.69 0.813842
Target:  5'- --uCAGCGGCAUCCUgGCCAC-ACa- -3'
miRNA:   3'- gguGUCGCUGUGGGAgCGGUGaUGgu -5'
10887 5' -56.9 NC_002794.1 + 195311 0.66 0.914247
Target:  5'- aCCGCcGCGuCGCCUUCGCCGaguagugGCUc -3'
miRNA:   3'- -GGUGuCGCuGUGGGAGCGGUga-----UGGu -5'
10887 5' -56.9 NC_002794.1 + 194988 0.69 0.787745
Target:  5'- gCACAGCGcCGCgCgcaCGCC-CUGCCGg -3'
miRNA:   3'- gGUGUCGCuGUGgGa--GCGGuGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194819 0.72 0.614003
Target:  5'- gCCGCAGCGACGCgCgCUCGCgGC--CCGg -3'
miRNA:   3'- -GGUGUCGCUGUG-G-GAGCGgUGauGGU- -5'
10887 5' -56.9 NC_002794.1 + 194793 0.66 0.914247
Target:  5'- gCGCAGCGGCuCCCagUGCC-CcACCAn -3'
miRNA:   3'- gGUGUCGCUGuGGGa-GCGGuGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194759 0.66 0.914247
Target:  5'- cCCACGGCGACugCUcCGagaACgGCCGg -3'
miRNA:   3'- -GGUGUCGCUGugGGaGCgg-UGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194145 0.76 0.391616
Target:  5'- gCCGCAGCaGCGCCCgcgaGCC-CUGCCGg -3'
miRNA:   3'- -GGUGUCGcUGUGGGag--CGGuGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194060 0.73 0.594135
Target:  5'- gCCGCcgagAGCGcCGCCUUCGUCGCcGCCAc -3'
miRNA:   3'- -GGUG----UCGCuGUGGGAGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 194027 0.69 0.76967
Target:  5'- gCCGcCGGCGccuCGCCCgcCGCCGCcGCCGc -3'
miRNA:   3'- -GGU-GUCGCu--GUGGGa-GCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 193934 0.66 0.930344
Target:  5'- gCCACcGcCGGCuccgGCCC-CGCCGCcACCGc -3'
miRNA:   3'- -GGUGuC-GCUG----UGGGaGCGGUGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 192981 0.7 0.732195
Target:  5'- aCCAgGGCGcgguCGCCCUCGCCcgGCgugugcagcGCCAg -3'
miRNA:   3'- -GGUgUCGCu---GUGGGAGCGG--UGa--------UGGU- -5'
10887 5' -56.9 NC_002794.1 + 192041 0.66 0.914247
Target:  5'- gCgGCGGCGGCugCUgcuGCUGCUGCUg -3'
miRNA:   3'- -GgUGUCGCUGugGGag-CGGUGAUGGu -5'
10887 5' -56.9 NC_002794.1 + 191681 0.79 0.301666
Target:  5'- gCgGCGGCGGCguGCCCUCGUCGCggACCAc -3'
miRNA:   3'- -GgUGUCGCUG--UGGGAGCGGUGa-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 191547 0.7 0.754873
Target:  5'- gCCGCAGUcggguccggguccacGACGCCgCuUCGCCgaaGCUGCCGc -3'
miRNA:   3'- -GGUGUCG---------------CUGUGG-G-AGCGG---UGAUGGU- -5'
10887 5' -56.9 NC_002794.1 + 191168 0.7 0.751131
Target:  5'- aCCACGGCGAggucaucguCGCgCUCGCC-CgGCCGc -3'
miRNA:   3'- -GGUGUCGCU---------GUGgGAGCGGuGaUGGU- -5'
10887 5' -56.9 NC_002794.1 + 190992 0.68 0.838533
Target:  5'- gCGCGGCGACGgCgUCGCgAUcgGCCGu -3'
miRNA:   3'- gGUGUCGCUGUgGgAGCGgUGa-UGGU- -5'
10887 5' -56.9 NC_002794.1 + 190509 0.73 0.584237
Target:  5'- aCCACGGCG-UGCCCa-GCCGCgUGCCGa -3'
miRNA:   3'- -GGUGUCGCuGUGGGagCGGUG-AUGGU- -5'
10887 5' -56.9 NC_002794.1 + 190161 0.66 0.919839
Target:  5'- -gGCGGCGgcucuccucgaACACCCgccgCGCCACcuCCAc -3'
miRNA:   3'- ggUGUCGC-----------UGUGGGa---GCGGUGauGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.