miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1089 3' -52.6 NC_000929.1 + 9277 0.67 0.679964
Target:  5'- aCGUGAGCGGCugcgucaggAGGUUuugcaccguGUCGCCgGUGGg -3'
miRNA:   3'- cGCACUCGUCG---------UCUAG---------UAGCGG-UACU- -5'
1089 3' -52.6 NC_000929.1 + 20586 0.68 0.610375
Target:  5'- aGCGgacGGGCAGcCGGAUgAU-GCCGUGGc -3'
miRNA:   3'- -CGCa--CUCGUC-GUCUAgUAgCGGUACU- -5'
1089 3' -52.6 NC_000929.1 + 20833 0.69 0.564241
Target:  5'- gGCGUGGaaAGCAGAacggcagCGUCGCCGgaggGAg -3'
miRNA:   3'- -CGCACUcgUCGUCUa------GUAGCGGUa---CU- -5'
1089 3' -52.6 NC_000929.1 + 8667 0.71 0.448026
Target:  5'- uGCuUGAGUguuucgaggacugucAGCAGcgUGUCGCCAUGAc -3'
miRNA:   3'- -CGcACUCG---------------UCGUCuaGUAGCGGUACU- -5'
1089 3' -52.6 NC_000929.1 + 25287 0.72 0.369679
Target:  5'- aCGUGGGCAgGCAGGUCugccggucccggaUGCCAUGAc -3'
miRNA:   3'- cGCACUCGU-CGUCUAGua-----------GCGGUACU- -5'
1089 3' -52.6 NC_000929.1 + 24381 1.12 0.000637
Target:  5'- aGCGUGAGCAGCAGAUCAUCGCCAUGAa -3'
miRNA:   3'- -CGCACUCGUCGUCUAGUAGCGGUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.