miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10890 3' -57.7 NC_002794.1 + 131370 0.66 0.925163
Target:  5'- aCCG-CUuCGCC--CGUGGUCGgcGCCGCg -3'
miRNA:   3'- -GGCaGAuGUGGacGCACCGGC--UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 152107 0.66 0.925163
Target:  5'- gCCGUCUgGgGCUUGC-UGcGCCGcuCCGCc -3'
miRNA:   3'- -GGCAGA-UgUGGACGcAC-CGGCu-GGCG- -5'
10890 3' -57.7 NC_002794.1 + 19281 0.66 0.925163
Target:  5'- gCGUCUccugGCcuggaGCCUcgucGCGUcGCUGACCGCc -3'
miRNA:   3'- gGCAGA----UG-----UGGA----CGCAcCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 181666 0.66 0.925163
Target:  5'- gCgGUgUACACguugGUGUGcGCgGACCGCc -3'
miRNA:   3'- -GgCAgAUGUGga--CGCAC-CGgCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 71232 0.66 0.925163
Target:  5'- gCGUagugGCgGCCgGCGUGGaCCGGCaCGUa -3'
miRNA:   3'- gGCAga--UG-UGGaCGCACC-GGCUG-GCG- -5'
10890 3' -57.7 NC_002794.1 + 125835 0.66 0.925163
Target:  5'- gCGccCUGCugCUGCGcuGCCGGCUGg -3'
miRNA:   3'- gGCa-GAUGugGACGCacCGGCUGGCg -5'
10890 3' -57.7 NC_002794.1 + 82543 0.66 0.922023
Target:  5'- uCCGUCagcgGCccucccgccggcccaGCCgGCGaGGCCGacGCCGCc -3'
miRNA:   3'- -GGCAGa---UG---------------UGGaCGCaCCGGC--UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 70220 0.66 0.919886
Target:  5'- cCCGg--ACGgUcggGCGggcGGCCGGCCGCc -3'
miRNA:   3'- -GGCagaUGUgGa--CGCa--CCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 92924 0.66 0.919886
Target:  5'- uCCGUCUgcaugcuacGCACCUgccGCGUcaagaaccGGCCcaucCCGCg -3'
miRNA:   3'- -GGCAGA---------UGUGGA---CGCA--------CCGGcu--GGCG- -5'
10890 3' -57.7 NC_002794.1 + 77099 0.66 0.919886
Target:  5'- uUCGUC-GC-CCUcCGaGGCaCGACCGCg -3'
miRNA:   3'- -GGCAGaUGuGGAcGCaCCG-GCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 150716 0.66 0.919886
Target:  5'- aUCGaCUucgACgUGCGgcGGCUGACCGCg -3'
miRNA:   3'- -GGCaGAug-UGgACGCa-CCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 133744 0.66 0.919347
Target:  5'- gCCGUUcgguCGCCUGCaG-GGUcccgacuCGACCGCu -3'
miRNA:   3'- -GGCAGau--GUGGACG-CaCCG-------GCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 63208 0.66 0.914391
Target:  5'- aCCGUCg--ACCUGCGcGaCCuGCCGCc -3'
miRNA:   3'- -GGCAGaugUGGACGCaCcGGcUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 31329 0.66 0.914391
Target:  5'- cUCGUCggcucgGCGCCcGcCGUGuccGCCGcCCGCu -3'
miRNA:   3'- -GGCAGa-----UGUGGaC-GCAC---CGGCuGGCG- -5'
10890 3' -57.7 NC_002794.1 + 66725 0.66 0.914391
Target:  5'- gCCGcCgcCACCgccgGCgGUGGCggcggcgcguaCGACCGCu -3'
miRNA:   3'- -GGCaGauGUGGa---CG-CACCG-----------GCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 100568 0.66 0.914391
Target:  5'- gCCGagcgGCACCUcuucacGCucgGGCCGugCGCg -3'
miRNA:   3'- -GGCaga-UGUGGA------CGca-CCGGCugGCG- -5'
10890 3' -57.7 NC_002794.1 + 103928 0.66 0.914391
Target:  5'- gCGgcgaGCAgCgcGCGUGGCCGccGCCGCu -3'
miRNA:   3'- gGCaga-UGUgGa-CGCACCGGC--UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 193178 0.66 0.914391
Target:  5'- cCCGcgCcGCGCCaGCGUguccaGGUCGugCGCc -3'
miRNA:   3'- -GGCa-GaUGUGGaCGCA-----CCGGCugGCG- -5'
10890 3' -57.7 NC_002794.1 + 193057 0.66 0.914391
Target:  5'- gCGcCcGCACCggcUGCG-GGCCGucgcgggacaGCCGCa -3'
miRNA:   3'- gGCaGaUGUGG---ACGCaCCGGC----------UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 28699 0.66 0.914391
Target:  5'- gCCGUugCUGCugCUGcCGUcGUCG-CCGCc -3'
miRNA:   3'- -GGCA--GAUGugGAC-GCAcCGGCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.