miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10890 3' -57.7 NC_002794.1 + 19873 1.13 0.001707
Target:  5'- aCCGUCUACACCUGCGUGGCCGACCGCu -3'
miRNA:   3'- -GGCAGAUGUGGACGCACCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 79288 0.85 0.12302
Target:  5'- gCGUCUuuuCCUGCGUGGCCGAgCGCc -3'
miRNA:   3'- gGCAGAuguGGACGCACCGGCUgGCG- -5'
10890 3' -57.7 NC_002794.1 + 149942 0.77 0.345426
Target:  5'- aCCGUCUACugucUCUGUcgggacGUGGCCGACCuGCc -3'
miRNA:   3'- -GGCAGAUGu---GGACG------CACCGGCUGG-CG- -5'
10890 3' -57.7 NC_002794.1 + 57399 0.77 0.345426
Target:  5'- aCCGgCUccgGCGCCcGCGUGGCCGGCgUGCu -3'
miRNA:   3'- -GGCaGA---UGUGGaCGCACCGGCUG-GCG- -5'
10890 3' -57.7 NC_002794.1 + 131313 0.75 0.477403
Target:  5'- gUCGUCaccuCGcCCUGgGUGGCCGGCuCGCc -3'
miRNA:   3'- -GGCAGau--GU-GGACgCACCGGCUG-GCG- -5'
10890 3' -57.7 NC_002794.1 + 126128 0.74 0.486478
Target:  5'- cUCGUCUGCGCCgGUuucUGGCCGGCCc- -3'
miRNA:   3'- -GGCAGAUGUGGaCGc--ACCGGCUGGcg -5'
10890 3' -57.7 NC_002794.1 + 137138 0.74 0.486478
Target:  5'- uCCGUC--CGCCcGCccGGCCGGCCGCc -3'
miRNA:   3'- -GGCAGauGUGGaCGcaCCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 63488 0.74 0.504866
Target:  5'- gCCGUCgacgACGCCgcgGCGUcGUCGuCCGCg -3'
miRNA:   3'- -GGCAGa---UGUGGa--CGCAcCGGCuGGCG- -5'
10890 3' -57.7 NC_002794.1 + 98971 0.74 0.504866
Target:  5'- gCCGUCggcgGCGCCgugGCcucgGUGGUCGGCgGCu -3'
miRNA:   3'- -GGCAGa---UGUGGa--CG----CACCGGCUGgCG- -5'
10890 3' -57.7 NC_002794.1 + 182062 0.74 0.514172
Target:  5'- gCGUaggGCGCCUGCGUccGGUCGGCCa- -3'
miRNA:   3'- gGCAga-UGUGGACGCA--CCGGCUGGcg -5'
10890 3' -57.7 NC_002794.1 + 107148 0.74 0.514172
Target:  5'- aCGUCgGCGCCcccgGCGagGGCCG-CCGCu -3'
miRNA:   3'- gGCAGaUGUGGa---CGCa-CCGGCuGGCG- -5'
10890 3' -57.7 NC_002794.1 + 152154 0.74 0.532987
Target:  5'- cCCG-CUccaGCGCCUGCG-GGCCG-CCGa -3'
miRNA:   3'- -GGCaGA---UGUGGACGCaCCGGCuGGCg -5'
10890 3' -57.7 NC_002794.1 + 80195 0.73 0.542488
Target:  5'- aCCGgCUACGCCUGgGcGGUCGacgacgccucGCCGCa -3'
miRNA:   3'- -GGCaGAUGUGGACgCaCCGGC----------UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 59719 0.73 0.571299
Target:  5'- aCCG---ACACCUuCGaGGCCGACCGCc -3'
miRNA:   3'- -GGCagaUGUGGAcGCaCCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 33687 0.73 0.58099
Target:  5'- cUCG-CUGCGCCUGUucGUGGCgGgcgaGCCGCu -3'
miRNA:   3'- -GGCaGAUGUGGACG--CACCGgC----UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 47954 0.72 0.590713
Target:  5'- gCGUCccgGCGCCgGC-UGGgCGACCGCc -3'
miRNA:   3'- gGCAGa--UGUGGaCGcACCgGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 71397 0.72 0.590713
Target:  5'- aCgGUCUGCGgCU-CG-GGCCGGCCGUc -3'
miRNA:   3'- -GgCAGAUGUgGAcGCaCCGGCUGGCG- -5'
10890 3' -57.7 NC_002794.1 + 141627 0.72 0.590713
Target:  5'- gCgGUCUagcgacgggaAgGCCgGCGUGGCCGcgGCCGCc -3'
miRNA:   3'- -GgCAGA----------UgUGGaCGCACCGGC--UGGCG- -5'
10890 3' -57.7 NC_002794.1 + 12224 0.72 0.590713
Target:  5'- gCGUCggcgGCGCCgGCG-GcGCCGuCCGCg -3'
miRNA:   3'- gGCAGa---UGUGGaCGCaC-CGGCuGGCG- -5'
10890 3' -57.7 NC_002794.1 + 101556 0.72 0.610237
Target:  5'- gCCGUUccgaACGCCgGCGggaGuGCCGGCCGCc -3'
miRNA:   3'- -GGCAGa---UGUGGaCGCa--C-CGGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.