miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10890 5' -56.8 NC_002794.1 + 151902 0.66 0.922549
Target:  5'- gGCGCcccagaGCCUGGCCgagcucCGUCUGCGGcGCAa -3'
miRNA:   3'- -CGUGc-----UGGACUGG------GCGGACGUCaUGU- -5'
10890 5' -56.8 NC_002794.1 + 65908 0.66 0.922549
Target:  5'- -gACGACCuUGACCgucguCGCCggcgGCGGUGg- -3'
miRNA:   3'- cgUGCUGG-ACUGG-----GCGGa---CGUCAUgu -5'
10890 5' -56.8 NC_002794.1 + 157672 0.66 0.917035
Target:  5'- -gGCGGCUUGGgCCGCUUgGC-GUGCAc -3'
miRNA:   3'- cgUGCUGGACUgGGCGGA-CGuCAUGU- -5'
10890 5' -56.8 NC_002794.1 + 33421 0.66 0.917035
Target:  5'- cGCACGACCcucgGGCUgGUCc-CGGUGCAg -3'
miRNA:   3'- -CGUGCUGGa---CUGGgCGGacGUCAUGU- -5'
10890 5' -56.8 NC_002794.1 + 124614 0.66 0.915336
Target:  5'- aCGCGACCgUGagcuuccugccggcGCCCGCCaUGguGcUGCAg -3'
miRNA:   3'- cGUGCUGG-AC--------------UGGGCGG-ACguC-AUGU- -5'
10890 5' -56.8 NC_002794.1 + 60978 0.66 0.911292
Target:  5'- cGCGCGccuCCgGACCCuCCUGCGcgACAu -3'
miRNA:   3'- -CGUGCu--GGaCUGGGcGGACGUcaUGU- -5'
10890 5' -56.8 NC_002794.1 + 19057 0.66 0.905322
Target:  5'- uCAC--CCUGA-CCGCCUGCGGUcACGg -3'
miRNA:   3'- cGUGcuGGACUgGGCGGACGUCA-UGU- -5'
10890 5' -56.8 NC_002794.1 + 115079 0.66 0.905322
Target:  5'- cCACGGCCUcGGCggCCGCCcGCAGccGCGc -3'
miRNA:   3'- cGUGCUGGA-CUG--GGCGGaCGUCa-UGU- -5'
10890 5' -56.8 NC_002794.1 + 33782 0.66 0.905322
Target:  5'- aGCACGacaGCCUGugCCGCCaccagaaguucUGcCAGcUGCu -3'
miRNA:   3'- -CGUGC---UGGACugGGCGG-----------AC-GUC-AUGu -5'
10890 5' -56.8 NC_002794.1 + 120457 0.66 0.901632
Target:  5'- cGCGuCGGCCUGgcucgauuucgcgcgGcCCCGCCUGCAcgagGCGc -3'
miRNA:   3'- -CGU-GCUGGAC---------------U-GGGCGGACGUca--UGU- -5'
10890 5' -56.8 NC_002794.1 + 128321 0.66 0.899127
Target:  5'- -gGCGACCgaGCCCGCCcggacGCGGUGg- -3'
miRNA:   3'- cgUGCUGGacUGGGCGGa----CGUCAUgu -5'
10890 5' -56.8 NC_002794.1 + 108602 0.66 0.899127
Target:  5'- gGCGCGGCC-GACCUGgUcGCGGUGg- -3'
miRNA:   3'- -CGUGCUGGaCUGGGCgGaCGUCAUgu -5'
10890 5' -56.8 NC_002794.1 + 89465 0.67 0.892709
Target:  5'- cCGCGGCUccgggGACuCCgGCCUGCGGUGu- -3'
miRNA:   3'- cGUGCUGGa----CUG-GG-CGGACGUCAUgu -5'
10890 5' -56.8 NC_002794.1 + 183247 0.67 0.892709
Target:  5'- aCGCGGC--GGCCCGCCacuCGGUACAg -3'
miRNA:   3'- cGUGCUGgaCUGGGCGGac-GUCAUGU- -5'
10890 5' -56.8 NC_002794.1 + 124791 0.67 0.886073
Target:  5'- cCGCGACCUGACCaaguucuaCgUGCAGgACAc -3'
miRNA:   3'- cGUGCUGGACUGGgc------GgACGUCaUGU- -5'
10890 5' -56.8 NC_002794.1 + 49704 0.67 0.886073
Target:  5'- gGCACGAC--GACUCGCCccggGCAGU-CGa -3'
miRNA:   3'- -CGUGCUGgaCUGGGCGGa---CGUCAuGU- -5'
10890 5' -56.8 NC_002794.1 + 101601 0.67 0.886073
Target:  5'- gGCGgGugCcGGCCCGCCgggcgGgGGUGCc -3'
miRNA:   3'- -CGUgCugGaCUGGGCGGa----CgUCAUGu -5'
10890 5' -56.8 NC_002794.1 + 68444 0.67 0.879221
Target:  5'- cGCugGuuccGCCUGGCCCGUUUcuucacggcGCAGUGgGg -3'
miRNA:   3'- -CGugC----UGGACUGGGCGGA---------CGUCAUgU- -5'
10890 5' -56.8 NC_002794.1 + 60936 0.67 0.879221
Target:  5'- gGCcauCGGCCUG-CaCCGCCUGCucgACGa -3'
miRNA:   3'- -CGu--GCUGGACuG-GGCGGACGucaUGU- -5'
10890 5' -56.8 NC_002794.1 + 148589 0.67 0.875008
Target:  5'- aGCACGGCCggccgccguccacgGACUCGgcCCUGCAGa--- -3'
miRNA:   3'- -CGUGCUGGa-------------CUGGGC--GGACGUCaugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.