miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10890 5' -56.8 NC_002794.1 + 11029 0.7 0.742198
Target:  5'- uCACGGCUcaccucuucccgugUGACCUggGCCUGCGGgUGCAg -3'
miRNA:   3'- cGUGCUGG--------------ACUGGG--CGGACGUC-AUGU- -5'
10890 5' -56.8 NC_002794.1 + 12084 0.69 0.799136
Target:  5'- aCACGACgCUGACCuggaccgacgggaCGCCgugGCAGaGCAu -3'
miRNA:   3'- cGUGCUG-GACUGG-------------GCGGa--CGUCaUGU- -5'
10890 5' -56.8 NC_002794.1 + 19057 0.66 0.905322
Target:  5'- uCAC--CCUGA-CCGCCUGCGGUcACGg -3'
miRNA:   3'- cGUGcuGGACUgGGCGGACGUCA-UGU- -5'
10890 5' -56.8 NC_002794.1 + 19907 1.1 0.002657
Target:  5'- aGCACGACCUGACCCGCCUGCAGUACAc -3'
miRNA:   3'- -CGUGCUGGACUGGGCGGACGUCAUGU- -5'
10890 5' -56.8 NC_002794.1 + 33421 0.66 0.917035
Target:  5'- cGCACGACCcucgGGCUgGUCc-CGGUGCAg -3'
miRNA:   3'- -CGUGCUGGa---CUGGgCGGacGUCAUGU- -5'
10890 5' -56.8 NC_002794.1 + 33782 0.66 0.905322
Target:  5'- aGCACGacaGCCUGugCCGCCaccagaaguucUGcCAGcUGCu -3'
miRNA:   3'- -CGUGC---UGGACugGGCGG-----------AC-GUC-AUGu -5'
10890 5' -56.8 NC_002794.1 + 34063 0.72 0.606689
Target:  5'- cGCACGACCcGccguuCCCGCCgGCGGccggGCAg -3'
miRNA:   3'- -CGUGCUGGaCu----GGGCGGaCGUCa---UGU- -5'
10890 5' -56.8 NC_002794.1 + 34124 0.68 0.849751
Target:  5'- cCGCGACCUGuuCCGCaaGCAGa--- -3'
miRNA:   3'- cGUGCUGGACugGGCGgaCGUCaugu -5'
10890 5' -56.8 NC_002794.1 + 38621 0.7 0.725879
Target:  5'- gGCGCGuCCcGACUCGCCggUGCGGcGCGa -3'
miRNA:   3'- -CGUGCuGGaCUGGGCGG--ACGUCaUGU- -5'
10890 5' -56.8 NC_002794.1 + 48060 0.67 0.857417
Target:  5'- gGCACGGCgcugaUGGCCgGCCaGCGGgaGCAg -3'
miRNA:   3'- -CGUGCUGg----ACUGGgCGGaCGUCa-UGU- -5'
10890 5' -56.8 NC_002794.1 + 49704 0.67 0.886073
Target:  5'- gGCACGAC--GACUCGCCccggGCAGU-CGa -3'
miRNA:   3'- -CGUGCUGgaCUGGGCGGa---CGUCAuGU- -5'
10890 5' -56.8 NC_002794.1 + 57217 0.68 0.849751
Target:  5'- uGCACcgccagaGCCUGACgCGCgUGCAGcGCGc -3'
miRNA:   3'- -CGUGc------UGGACUGgGCGgACGUCaUGU- -5'
10890 5' -56.8 NC_002794.1 + 58136 0.79 0.275548
Target:  5'- -gGCGGCCUGGCCCGCC-GCcucGUGCAc -3'
miRNA:   3'- cgUGCUGGACUGGGCGGaCGu--CAUGU- -5'
10890 5' -56.8 NC_002794.1 + 60936 0.67 0.879221
Target:  5'- gGCcauCGGCCUG-CaCCGCCUGCucgACGa -3'
miRNA:   3'- -CGu--GCUGGACuG-GGCGGACGucaUGU- -5'
10890 5' -56.8 NC_002794.1 + 60978 0.66 0.911292
Target:  5'- cGCGCGccuCCgGACCCuCCUGCGcgACAu -3'
miRNA:   3'- -CGUGCu--GGaCUGGGcGGACGUcaUGU- -5'
10890 5' -56.8 NC_002794.1 + 63017 0.67 0.864888
Target:  5'- gGCugGAgCUGguGCUCGCCUGCGc-GCAg -3'
miRNA:   3'- -CGugCUgGAC--UGGGCGGACGUcaUGU- -5'
10890 5' -56.8 NC_002794.1 + 65908 0.66 0.922549
Target:  5'- -gACGACCuUGACCgucguCGCCggcgGCGGUGg- -3'
miRNA:   3'- cgUGCUGG-ACUGG-----GCGGa---CGUCAUgu -5'
10890 5' -56.8 NC_002794.1 + 66719 0.69 0.763843
Target:  5'- gGCACGGCCgccgccaCCGCCgGCGGUGg- -3'
miRNA:   3'- -CGUGCUGGacug---GGCGGaCGUCAUgu -5'
10890 5' -56.8 NC_002794.1 + 68444 0.67 0.879221
Target:  5'- cGCugGuuccGCCUGGCCCGUUUcuucacggcGCAGUGgGg -3'
miRNA:   3'- -CGugC----UGGACUGGGCGGA---------CGUCAUgU- -5'
10890 5' -56.8 NC_002794.1 + 69245 0.79 0.263053
Target:  5'- cCGCGACCUGGCCCGCUcGCGcuccGUACGu -3'
miRNA:   3'- cGUGCUGGACUGGGCGGaCGU----CAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.