miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10891 3' -60.7 NC_002794.1 + 41690 0.66 0.797313
Target:  5'- cGCCCgGACCGCCgGaucGUCcCGG-GCg -3'
miRNA:   3'- -UGGGaCUGGCGGaCgc-CAGuGCCaCG- -5'
10891 3' -60.7 NC_002794.1 + 184454 0.66 0.789557
Target:  5'- cGCCgCUG-CCGCCcGCGGgccgcgcgaacggcgCGCGGgGCc -3'
miRNA:   3'- -UGG-GACuGGCGGaCGCCa--------------GUGCCaCG- -5'
10891 3' -60.7 NC_002794.1 + 47738 0.66 0.788689
Target:  5'- aGCCCgccggguccacgUGGCgGCC-GUGGUCGCGGcacaacGCg -3'
miRNA:   3'- -UGGG------------ACUGgCGGaCGCCAGUGCCa-----CG- -5'
10891 3' -60.7 NC_002794.1 + 83948 0.66 0.788689
Target:  5'- cGCCUgGACCGCCUG-GGcCGCcuGGaGCg -3'
miRNA:   3'- -UGGGaCUGGCGGACgCCaGUG--CCaCG- -5'
10891 3' -60.7 NC_002794.1 + 62393 0.66 0.788689
Target:  5'- cACCuccgaCUGACCGCCU-CGGaCcuGCGGUGg -3'
miRNA:   3'- -UGG-----GACUGGCGGAcGCCaG--UGCCACg -5'
10891 3' -60.7 NC_002794.1 + 138915 0.66 0.779938
Target:  5'- gUgCUGACCGCg-GCGGauggUCugcCGGUGCg -3'
miRNA:   3'- uGgGACUGGCGgaCGCC----AGu--GCCACG- -5'
10891 3' -60.7 NC_002794.1 + 19115 0.66 0.779938
Target:  5'- gACCUUgGACCGag-GCGGguuaagCGCGGUGg -3'
miRNA:   3'- -UGGGA-CUGGCggaCGCCa-----GUGCCACg -5'
10891 3' -60.7 NC_002794.1 + 152580 0.66 0.779056
Target:  5'- cGCCgCggcGGCCGCCacgucccUGCGG-CGCGG-GCc -3'
miRNA:   3'- -UGG-Ga--CUGGCGG-------ACGCCaGUGCCaCG- -5'
10891 3' -60.7 NC_002794.1 + 61141 0.66 0.776404
Target:  5'- cCCCUGcuGCCGCCcgaccccgagcgcGCGGUC-CGGaucgGCg -3'
miRNA:   3'- uGGGAC--UGGCGGa------------CGCCAGuGCCa---CG- -5'
10891 3' -60.7 NC_002794.1 + 95072 0.66 0.774629
Target:  5'- -aCCUGACCuGUCUccagugcuacgaggaGCuGGcCGCGGUGCc -3'
miRNA:   3'- ugGGACUGG-CGGA---------------CG-CCaGUGCCACG- -5'
10891 3' -60.7 NC_002794.1 + 154277 0.66 0.771067
Target:  5'- uCCC-GACCGCCggcGCGGcUCgACGGUc- -3'
miRNA:   3'- uGGGaCUGGCGGa--CGCC-AG-UGCCAcg -5'
10891 3' -60.7 NC_002794.1 + 96974 0.66 0.771067
Target:  5'- cACCgUGcCuCGCgaGCGcGUCACGG-GCa -3'
miRNA:   3'- -UGGgACuG-GCGgaCGC-CAGUGCCaCG- -5'
10891 3' -60.7 NC_002794.1 + 187137 0.66 0.771067
Target:  5'- cGCCCguaGCCGCCca-GGUaCACGGcGCa -3'
miRNA:   3'- -UGGGac-UGGCGGacgCCA-GUGCCaCG- -5'
10891 3' -60.7 NC_002794.1 + 100083 0.66 0.767487
Target:  5'- cGCCCgucuuccacguCCGCgUGCGGcgcgugcaGCGGUGCu -3'
miRNA:   3'- -UGGGacu--------GGCGgACGCCag------UGCCACG- -5'
10891 3' -60.7 NC_002794.1 + 94991 0.66 0.762084
Target:  5'- aGCUCUGucGCCGCUUGCuGUCGCugauGGgGCg -3'
miRNA:   3'- -UGGGAC--UGGCGGACGcCAGUG----CCaCG- -5'
10891 3' -60.7 NC_002794.1 + 90217 0.66 0.762084
Target:  5'- cGCCCgccgcgccgGAgccCCGCCUGUGGUCcccgcGCGcGUGg -3'
miRNA:   3'- -UGGGa--------CU---GGCGGACGCCAG-----UGC-CACg -5'
10891 3' -60.7 NC_002794.1 + 90170 0.66 0.762084
Target:  5'- cCCCgUGAa-GCCUccgaggacgcGCGGgggCACGGUGCc -3'
miRNA:   3'- uGGG-ACUggCGGA----------CGCCa--GUGCCACG- -5'
10891 3' -60.7 NC_002794.1 + 192141 0.66 0.76118
Target:  5'- uUgCUG-CUGCCggcGCGGUCGCGGcggagccUGCg -3'
miRNA:   3'- uGgGACuGGCGGa--CGCCAGUGCC-------ACG- -5'
10891 3' -60.7 NC_002794.1 + 107211 0.66 0.752997
Target:  5'- cGCCCggcGCCGCCggGCGGcgcgCgACGGggGCg -3'
miRNA:   3'- -UGGGac-UGGCGGa-CGCCa---G-UGCCa-CG- -5'
10891 3' -60.7 NC_002794.1 + 61966 0.66 0.752997
Target:  5'- gGCCagcGGCCGCCUGCugcaGGUCAaGcUGCa -3'
miRNA:   3'- -UGGga-CUGGCGGACG----CCAGUgCcACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.