miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10891 5' -53.7 NC_002794.1 + 102410 0.66 0.985855
Target:  5'- cCGCGACGcGGCCGuGGCcgAGGCCg--- -3'
miRNA:   3'- aGCGUUGCuCUGGC-UCG--UCUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 43656 0.66 0.985855
Target:  5'- cCGCcgAACGAG-CCGGGCucucGGGCCcgGGc -3'
miRNA:   3'- aGCG--UUGCUCuGGCUCG----UCUGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 187481 0.66 0.985855
Target:  5'- gCGCcgggccgagGACGAGGCCGcGCAGgcgGCCagGGc -3'
miRNA:   3'- aGCG---------UUGCUCUGGCuCGUC---UGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 137521 0.66 0.985855
Target:  5'- uUCGaCGugGAuGACCGAGaCGGAgUCUUcGGg -3'
miRNA:   3'- -AGC-GUugCU-CUGGCUC-GUCU-GGAA-CC- -5'
10891 5' -53.7 NC_002794.1 + 94482 0.66 0.985855
Target:  5'- -gGCGGCG-GACgCGGccGCGGGCCgUGGc -3'
miRNA:   3'- agCGUUGCuCUG-GCU--CGUCUGGaACC- -5'
10891 5' -53.7 NC_002794.1 + 60221 0.66 0.985855
Target:  5'- cCGCGACGccGCCGAGCGcGCCc--- -3'
miRNA:   3'- aGCGUUGCucUGGCUCGUcUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 140954 0.66 0.985855
Target:  5'- aUCGCGcggaguGCGugagguuGGCCGAGCGGaACCacGGc -3'
miRNA:   3'- -AGCGU------UGCu------CUGGCUCGUC-UGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 182264 0.66 0.98412
Target:  5'- gCGCGcCGAGucCCGAGCGG-CCUc-- -3'
miRNA:   3'- aGCGUuGCUCu-GGCUCGUCuGGAacc -5'
10891 5' -53.7 NC_002794.1 + 186014 0.66 0.98412
Target:  5'- cCGCucCGGGcCCGGGCccGGACCcgGGc -3'
miRNA:   3'- aGCGuuGCUCuGGCUCG--UCUGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 108450 0.66 0.982228
Target:  5'- cUCGCGGCGGcGGCCcgccGGCAcgGGCCgaGGg -3'
miRNA:   3'- -AGCGUUGCU-CUGGc---UCGU--CUGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 104635 0.66 0.982228
Target:  5'- cUCGUugucGCGc-GCCGAGCAGGCCa--- -3'
miRNA:   3'- -AGCGu---UGCucUGGCUCGUCUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 122396 0.66 0.982228
Target:  5'- -gGCcaugGACGAGACCcaggagguguucGAGCAGuACCU-GGa -3'
miRNA:   3'- agCG----UUGCUCUGG------------CUCGUC-UGGAaCC- -5'
10891 5' -53.7 NC_002794.1 + 99420 0.66 0.980171
Target:  5'- gUCGCAGCaGGGuCCGGGUuuguuGGACCg--- -3'
miRNA:   3'- -AGCGUUG-CUCuGGCUCG-----UCUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 102185 0.66 0.980171
Target:  5'- gCGCGGCGAgGACCuGGCGGccGCCgugacGGa -3'
miRNA:   3'- aGCGUUGCU-CUGGcUCGUC--UGGaa---CC- -5'
10891 5' -53.7 NC_002794.1 + 89499 0.66 0.980171
Target:  5'- cCGCGAUgcgggcagGAGACCGcGUAGGCCa--- -3'
miRNA:   3'- aGCGUUG--------CUCUGGCuCGUCUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 182211 0.66 0.979521
Target:  5'- gUCGCGccACGgggcuccgacggucAGGCCGcAGCAGGCCa-GGa -3'
miRNA:   3'- -AGCGU--UGC--------------UCUGGC-UCGUCUGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 120288 0.66 0.977942
Target:  5'- -aGCu-CGAGcacGCCGAGCccgGGGCCUUGc -3'
miRNA:   3'- agCGuuGCUC---UGGCUCG---UCUGGAACc -5'
10891 5' -53.7 NC_002794.1 + 152651 0.66 0.977942
Target:  5'- -aGCGGCGAGACgucgugcuCGAGCAGuAUCgcgagcUGGg -3'
miRNA:   3'- agCGUUGCUCUG--------GCUCGUC-UGGa-----ACC- -5'
10891 5' -53.7 NC_002794.1 + 153717 0.66 0.977942
Target:  5'- cCGCGACGucaccgacGCCGAGCcGACCg-GGu -3'
miRNA:   3'- aGCGUUGCuc------UGGCUCGuCUGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 148830 0.66 0.977942
Target:  5'- cUGCccCGcGACCGGGauCGGAUCUUGGg -3'
miRNA:   3'- aGCGuuGCuCUGGCUC--GUCUGGAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.