miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10891 5' -53.7 NC_002794.1 + 18 0.67 0.97015
Target:  5'- cCGCGaacacgaaaACGAGGCCGccGCGGGCuCUcGGa -3'
miRNA:   3'- aGCGU---------UGCUCUGGCu-CGUCUG-GAaCC- -5'
10891 5' -53.7 NC_002794.1 + 2735 0.68 0.953099
Target:  5'- -gGCGAcCGAGACCGGGUcccauGACCUc-- -3'
miRNA:   3'- agCGUU-GCUCUGGCUCGu----CUGGAacc -5'
10891 5' -53.7 NC_002794.1 + 14563 0.69 0.913516
Target:  5'- gCGCGggagGCGAgccggccGACCGaAGCGGGCCgUGGc -3'
miRNA:   3'- aGCGU----UGCU-------CUGGC-UCGUCUGGaACC- -5'
10891 5' -53.7 NC_002794.1 + 14616 0.7 0.882194
Target:  5'- cCGCGACGGGGCCGgAGacgGGGCCgggcacGGa -3'
miRNA:   3'- aGCGUUGCUCUGGC-UCg--UCUGGaa----CC- -5'
10891 5' -53.7 NC_002794.1 + 14882 0.68 0.94474
Target:  5'- uUCGCcGCGAG-CCGAGaCcGACCUUc- -3'
miRNA:   3'- -AGCGuUGCUCuGGCUC-GuCUGGAAcc -5'
10891 5' -53.7 NC_002794.1 + 14979 0.69 0.930471
Target:  5'- aCGCGACGcGACCcGGCAGcagcuCCUcGGg -3'
miRNA:   3'- aGCGUUGCuCUGGcUCGUCu----GGAaCC- -5'
10891 5' -53.7 NC_002794.1 + 18194 0.7 0.895635
Target:  5'- cCGCGACGAGGCCGAcGCcu-CCUa-- -3'
miRNA:   3'- aGCGUUGCUCUGGCU-CGucuGGAacc -5'
10891 5' -53.7 NC_002794.1 + 19096 1.12 0.004584
Target:  5'- uUCGCAACGAGACCGAGCAGACCUUGGa -3'
miRNA:   3'- -AGCGUUGCUCUGGCUCGUCUGGAACC- -5'
10891 5' -53.7 NC_002794.1 + 20395 0.72 0.793947
Target:  5'- gUGCGGCGGGACCGGGagcgGGGCCa--- -3'
miRNA:   3'- aGCGUUGCUCUGGCUCg---UCUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 21726 0.73 0.747507
Target:  5'- gUCGCGaucGCGAGGCCGAaGCGGugCg--- -3'
miRNA:   3'- -AGCGU---UGCUCUGGCU-CGUCugGaacc -5'
10891 5' -53.7 NC_002794.1 + 24193 0.69 0.925248
Target:  5'- -gGCAcCGAGACCGAGCGcggcGGCCc--- -3'
miRNA:   3'- agCGUuGCUCUGGCUCGU----CUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 31720 0.69 0.914098
Target:  5'- gCGCGggaucccggAUGAGACCGGGCGGGCg---- -3'
miRNA:   3'- aGCGU---------UGCUCUGGCUCGUCUGgaacc -5'
10891 5' -53.7 NC_002794.1 + 31996 0.68 0.940216
Target:  5'- cUGCGuggGCGAG-CCGAcGCAGACCaggcagGGg -3'
miRNA:   3'- aGCGU---UGCUCuGGCU-CGUCUGGaa----CC- -5'
10891 5' -53.7 NC_002794.1 + 32580 0.66 0.977942
Target:  5'- gCGCGGCGGuGCCGGGgCcgGGGCCggGGc -3'
miRNA:   3'- aGCGUUGCUcUGGCUC-G--UCUGGaaCC- -5'
10891 5' -53.7 NC_002794.1 + 34721 0.67 0.967161
Target:  5'- gCGCcACGAGGCgCGGGCGG-CCg--- -3'
miRNA:   3'- aGCGuUGCUCUG-GCUCGUCuGGaacc -5'
10891 5' -53.7 NC_002794.1 + 41289 0.7 0.875146
Target:  5'- -gGCGGCGGcuCCGAcGCGGGCCgcgUGGg -3'
miRNA:   3'- agCGUUGCUcuGGCU-CGUCUGGa--ACC- -5'
10891 5' -53.7 NC_002794.1 + 41813 0.7 0.902018
Target:  5'- gUC-CAGCGAGgcGCCcAGCAGGCCcgUGGu -3'
miRNA:   3'- -AGcGUUGCUC--UGGcUCGUCUGGa-ACC- -5'
10891 5' -53.7 NC_002794.1 + 42483 0.7 0.889025
Target:  5'- gCGCGcCGGGGCCGAGCGGAg----- -3'
miRNA:   3'- aGCGUuGCUCUGGCUCGUCUggaacc -5'
10891 5' -53.7 NC_002794.1 + 43044 0.71 0.867884
Target:  5'- gCGCGGC-AGGCCGAGCcGGCCa--- -3'
miRNA:   3'- aGCGUUGcUCUGGCUCGuCUGGaacc -5'
10891 5' -53.7 NC_002794.1 + 43656 0.66 0.985855
Target:  5'- cCGCcgAACGAG-CCGGGCucucGGGCCcgGGc -3'
miRNA:   3'- aGCG--UUGCUCuGGCUCG----UCUGGaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.