miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 37915 0.66 0.883326
Target:  5'- cGCCGGcCUCAACGUcaacCGCCgcgGccgCCCg -3'
miRNA:   3'- -UGGCC-GAGUUGCAcuc-GCGGa--Ca--GGG- -5'
10892 5' -58.4 NC_002794.1 + 91668 0.66 0.883326
Target:  5'- gUCGGCgc-ACGUGGGCGCgCUgGUCUUc -3'
miRNA:   3'- uGGCCGaguUGCACUCGCG-GA-CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 63630 0.66 0.883326
Target:  5'- uGCCGGCcgagcaccucgUCuGCGUGAcCGCCaacGUCUCg -3'
miRNA:   3'- -UGGCCG-----------AGuUGCACUcGCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 114747 0.66 0.876491
Target:  5'- aGCCGGCgccgccCGccGGCGCCgGUCCUc -3'
miRNA:   3'- -UGGCCGaguu--GCacUCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 115192 0.66 0.876491
Target:  5'- uGCCGGCggucgagcCGGCGU-AGCGCCUccgCCUu -3'
miRNA:   3'- -UGGCCGa-------GUUGCAcUCGCGGAca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 101607 0.66 0.876491
Target:  5'- uGCCGGCcCGccggGCGgGGGUGCCguuucGUCCg -3'
miRNA:   3'- -UGGCCGaGU----UGCaCUCGCGGa----CAGGg -5'
10892 5' -58.4 NC_002794.1 + 85063 0.66 0.869452
Target:  5'- gACCGGC-CAcgccGCGUcuGCGCCcccgGUCUCu -3'
miRNA:   3'- -UGGCCGaGU----UGCAcuCGCGGa---CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 47742 0.66 0.869452
Target:  5'- cGCCGGgUCcACGUG-GCGgCCgugGUCgCg -3'
miRNA:   3'- -UGGCCgAGuUGCACuCGC-GGa--CAGgG- -5'
10892 5' -58.4 NC_002794.1 + 101681 0.66 0.869452
Target:  5'- cGCCGGCggAGCGcGAGCccgaGCCggcgCCCg -3'
miRNA:   3'- -UGGCCGagUUGCaCUCG----CGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 119555 0.66 0.867302
Target:  5'- cGCCGGC-C-ACGUgucccgGAGCGCCUugacuucgccgaacGUCCg -3'
miRNA:   3'- -UGGCCGaGuUGCA------CUCGCGGA--------------CAGGg -5'
10892 5' -58.4 NC_002794.1 + 12998 0.66 0.854784
Target:  5'- uGCuCGuGCUCAGCcgacagGAacgcacGCGCCUGUUCCu -3'
miRNA:   3'- -UG-GC-CGAGUUGca----CU------CGCGGACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 147055 0.66 0.854784
Target:  5'- gGCCGGuCUaagGACGgagccgcGGGCGCCcgGUCCa -3'
miRNA:   3'- -UGGCC-GAg--UUGCa------CUCGCGGa-CAGGg -5'
10892 5' -58.4 NC_002794.1 + 124404 0.66 0.847166
Target:  5'- cGCCGG-UCGuCG-GGGCGCC-GUCCg -3'
miRNA:   3'- -UGGCCgAGUuGCaCUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 101118 0.66 0.847166
Target:  5'- gGCC-GC-CGcCGUGGcGCGCCUGgCCCg -3'
miRNA:   3'- -UGGcCGaGUuGCACU-CGCGGACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 116698 0.66 0.847166
Target:  5'- aGCCGGCcuccagCAccGCGUcGAGCGUCUcgGUgCCg -3'
miRNA:   3'- -UGGCCGa-----GU--UGCA-CUCGCGGA--CAgGG- -5'
10892 5' -58.4 NC_002794.1 + 65136 0.66 0.847166
Target:  5'- uCCGaGCUCcucGGCGacUGGGuCGCC-GUCCCg -3'
miRNA:   3'- uGGC-CGAG---UUGC--ACUC-GCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 123107 0.66 0.846394
Target:  5'- gACauGCUgAACGUgugcgucGAGCGCCacGUCCCc -3'
miRNA:   3'- -UGgcCGAgUUGCA-------CUCGCGGa-CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 151241 0.67 0.841725
Target:  5'- uACCGGCUCAcCGUcgugcucuucaacGAGCGCUgcgaaacguucgCCCu -3'
miRNA:   3'- -UGGCCGAGUuGCA-------------CUCGCGGaca---------GGG- -5'
10892 5' -58.4 NC_002794.1 + 128481 0.67 0.839366
Target:  5'- cACCGGgUC-GCGgaccGGGgGCC-GUCCCu -3'
miRNA:   3'- -UGGCCgAGuUGCa---CUCgCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 31332 0.67 0.839366
Target:  5'- gUCGGCUCGGCGcc--CGCCgUGUCCg -3'
miRNA:   3'- uGGCCGAGUUGCacucGCGG-ACAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.