miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 18978 1.12 0.001564
Target:  5'- gACCGGCUCAACGUGAGCGCCUGUCCCa -3'
miRNA:   3'- -UGGCCGAGUUGCACUCGCGGACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 155908 0.77 0.305801
Target:  5'- gACCGGCUCGACGUGcggagccgGGUGCUUG-CCg -3'
miRNA:   3'- -UGGCCGAGUUGCAC--------UCGCGGACaGGg -5'
10892 5' -58.4 NC_002794.1 + 22946 0.74 0.429324
Target:  5'- gGCUGGC-CGACGggccGGCGCCguUGUCCCc -3'
miRNA:   3'- -UGGCCGaGUUGCac--UCGCGG--ACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 126610 0.73 0.464498
Target:  5'- gGCCGGCgccgacgucgCGGCGUGAGCGCgaccgGgcgCCCg -3'
miRNA:   3'- -UGGCCGa---------GUUGCACUCGCGga---Ca--GGG- -5'
10892 5' -58.4 NC_002794.1 + 60869 0.73 0.464498
Target:  5'- gGCCGGCUCucaaGUacaucGGCGCCgugGUCCCc -3'
miRNA:   3'- -UGGCCGAGuug-CAc----UCGCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 126357 0.73 0.478983
Target:  5'- cCCGGCUCcgauuucgccgcuGCGUGGGCGCCggggCCUg -3'
miRNA:   3'- uGGCCGAGu------------UGCACUCGCGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 113531 0.73 0.482639
Target:  5'- cGCCGGCUCGGCGU---CGCCgg-CCCg -3'
miRNA:   3'- -UGGCCGAGUUGCAcucGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 100055 0.73 0.491838
Target:  5'- uACCGGCUCAGCGacacgcuggagcUG-GCGCCcGUCUUc -3'
miRNA:   3'- -UGGCCGAGUUGC------------ACuCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 116802 0.73 0.491838
Target:  5'- aGCCGGCUCGggcgccguaGCGcGGGuCGCUcugGUCCCg -3'
miRNA:   3'- -UGGCCGAGU---------UGCaCUC-GCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 106347 0.73 0.501116
Target:  5'- cGCCGGgUCGACGgcgggcGGGCGCCgGUUCg -3'
miRNA:   3'- -UGGCCgAGUUGCa-----CUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 123702 0.72 0.5476
Target:  5'- gACUGGCg-GGCGUGAGCGCgucguucuauccgCUGcCCCa -3'
miRNA:   3'- -UGGCCGagUUGCACUCGCG-------------GACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 26657 0.72 0.548564
Target:  5'- gGCCGGCUCGucgGCGgggugGAGCGCCa---CCg -3'
miRNA:   3'- -UGGCCGAGU---UGCa----CUCGCGGacagGG- -5'
10892 5' -58.4 NC_002794.1 + 145746 0.72 0.556295
Target:  5'- cGCCGGCaUCGACGgcgaccccgagcGAGCGCCacgcggagucGUCCCc -3'
miRNA:   3'- -UGGCCG-AGUUGCa-----------CUCGCGGa---------CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 35064 0.72 0.567949
Target:  5'- gACCGccGCU--GCGUGGGCGCCcUGgugCCCg -3'
miRNA:   3'- -UGGC--CGAguUGCACUCGCGG-ACa--GGG- -5'
10892 5' -58.4 NC_002794.1 + 138730 0.71 0.587501
Target:  5'- aGCCGGCUCGACG-GGGUcCCcGgCCCu -3'
miRNA:   3'- -UGGCCGAGUUGCaCUCGcGGaCaGGG- -5'
10892 5' -58.4 NC_002794.1 + 182037 0.71 0.606188
Target:  5'- cGCCGGCgacCAgaccagguccugcGCGUaGGGCGCCUGcgUCCg -3'
miRNA:   3'- -UGGCCGa--GU-------------UGCA-CUCGCGGACa-GGG- -5'
10892 5' -58.4 NC_002794.1 + 187833 0.71 0.617039
Target:  5'- cGCuCGGCUCGGCGcgccGAGgGCuCUG-CCCa -3'
miRNA:   3'- -UG-GCCGAGUUGCa---CUCgCG-GACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 143030 0.7 0.646672
Target:  5'- gGCCGGgUCGACGUGcAGgGCCg--CCa -3'
miRNA:   3'- -UGGCCgAGUUGCAC-UCgCGGacaGGg -5'
10892 5' -58.4 NC_002794.1 + 90470 0.7 0.656537
Target:  5'- gGCCGcGCgCGGCG-GGGcCGCC-GUCCCg -3'
miRNA:   3'- -UGGC-CGaGUUGCaCUC-GCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 93057 0.7 0.656537
Target:  5'- uCCuGCUCuACGccuuccacGAGCGCCUGuUCCCg -3'
miRNA:   3'- uGGcCGAGuUGCa-------CUCGCGGAC-AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.