miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 122887 0.7 0.666385
Target:  5'- cGCCGaGCUCAACGagcgcacGGGCGCCgaGUUCg -3'
miRNA:   3'- -UGGC-CGAGUUGCa------CUCGCGGa-CAGGg -5'
10892 5' -58.4 NC_002794.1 + 68942 0.7 0.685995
Target:  5'- cGCgGGCcgCGGCGccGGCGCCUcUCCCu -3'
miRNA:   3'- -UGgCCGa-GUUGCacUCGCGGAcAGGG- -5'
10892 5' -58.4 NC_002794.1 + 190747 0.69 0.695741
Target:  5'- cGCCGuCUCGACGgGGGCggcgGCCgcgcGUCCCg -3'
miRNA:   3'- -UGGCcGAGUUGCaCUCG----CGGa---CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 64482 0.69 0.695741
Target:  5'- cGCCGGCUUgAACGUGcAG-GCCgGcCCCu -3'
miRNA:   3'- -UGGCCGAG-UUGCAC-UCgCGGaCaGGG- -5'
10892 5' -58.4 NC_002794.1 + 150613 0.69 0.695741
Target:  5'- cGCCGGCUCuGCGgGAGCucgugaGCCaGuaUCCCg -3'
miRNA:   3'- -UGGCCGAGuUGCaCUCG------CGGaC--AGGG- -5'
10892 5' -58.4 NC_002794.1 + 127795 0.69 0.715077
Target:  5'- gGCCGGCUCcgagucGACGccgagcGAGCGCCcGUCg- -3'
miRNA:   3'- -UGGCCGAG------UUGCa-----CUCGCGGaCAGgg -5'
10892 5' -58.4 NC_002794.1 + 90403 0.69 0.715077
Target:  5'- uCgGGCUgcACGUGAGCaucgGCC-GUCCCg -3'
miRNA:   3'- uGgCCGAguUGCACUCG----CGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 35782 0.69 0.724651
Target:  5'- cGCCGGCgucgucucCGGCGUGAcccuGCGCCcccgGaCCCg -3'
miRNA:   3'- -UGGCCGa-------GUUGCACU----CGCGGa---CaGGG- -5'
10892 5' -58.4 NC_002794.1 + 16339 0.69 0.724651
Target:  5'- gGCCGGCaccgaCGACGUcGGCGCCa--CCCg -3'
miRNA:   3'- -UGGCCGa----GUUGCAcUCGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 145562 0.69 0.733204
Target:  5'- gACCGGUUC-GCGgacGAGCGCCgacgGagcggcggccggcUCCCg -3'
miRNA:   3'- -UGGCCGAGuUGCa--CUCGCGGa---C-------------AGGG- -5'
10892 5' -58.4 NC_002794.1 + 118653 0.69 0.73415
Target:  5'- gGCCaGCUCGucCGUGGGCGCgacgCCCg -3'
miRNA:   3'- -UGGcCGAGUu-GCACUCGCGgacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 152143 0.69 0.743567
Target:  5'- aGCCGGUUCAACccgcuccAGCGCCUGcgggCCg -3'
miRNA:   3'- -UGGCCGAGUUGcac----UCGCGGACa---GGg -5'
10892 5' -58.4 NC_002794.1 + 34109 0.69 0.743567
Target:  5'- cCCGGaccgCGACGUccGCGaCCUGUUCCg -3'
miRNA:   3'- uGGCCga--GUUGCAcuCGC-GGACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 78801 0.68 0.752892
Target:  5'- uAUCGcGCgucaaCGACGUGAGgucgGCCUGUCCg -3'
miRNA:   3'- -UGGC-CGa----GUUGCACUCg---CGGACAGGg -5'
10892 5' -58.4 NC_002794.1 + 48074 0.68 0.752892
Target:  5'- gGCCGGC-CAGCGgGAGCaGCCgccgCUCg -3'
miRNA:   3'- -UGGCCGaGUUGCaCUCG-CGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 126429 0.68 0.752892
Target:  5'- uGCUGG-UCGAggUGUGGGCGCCUcggCCCu -3'
miRNA:   3'- -UGGCCgAGUU--GCACUCGCGGAca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 145316 0.68 0.762119
Target:  5'- aACCGGCgcgCGGCGggcGGCGCUcGggCCCg -3'
miRNA:   3'- -UGGCCGa--GUUGCac-UCGCGGaCa-GGG- -5'
10892 5' -58.4 NC_002794.1 + 128530 0.68 0.771238
Target:  5'- uCUGGCUCugGACGgucggGuGCGCC-GUCCUg -3'
miRNA:   3'- uGGCCGAG--UUGCa----CuCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 81428 0.68 0.771238
Target:  5'- cCCGGCUU--CGaGAccGCGCCUGUgCCg -3'
miRNA:   3'- uGGCCGAGuuGCaCU--CGCGGACAgGG- -5'
10892 5' -58.4 NC_002794.1 + 12025 0.68 0.780242
Target:  5'- cGCCGGCccgGGCGUccGCGCCU-UCCCc -3'
miRNA:   3'- -UGGCCGag-UUGCAcuCGCGGAcAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.