miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 90089 0.67 0.834601
Target:  5'- -gUGGCUCGGCacgcucugcgccgcgGUGGGCGCCgugaGUCUg -3'
miRNA:   3'- ugGCCGAGUUG---------------CACUCGCGGa---CAGGg -5'
10892 5' -58.4 NC_002794.1 + 188795 0.67 0.83139
Target:  5'- gGCCGGCcCcGCc-GAGCGCC-GUCCa -3'
miRNA:   3'- -UGGCCGaGuUGcaCUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 150480 0.67 0.830583
Target:  5'- uCUGGCUC-ACGUGcaccugcGGCGCCgccuccUCCCc -3'
miRNA:   3'- uGGCCGAGuUGCAC-------UCGCGGac----AGGG- -5'
10892 5' -58.4 NC_002794.1 + 45238 0.67 0.828964
Target:  5'- -gUGGCUCAACGUGAcguuggugacgacgGCGCgacaGUCCUu -3'
miRNA:   3'- ugGCCGAGUUGCACU--------------CGCGga--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 23008 0.67 0.823246
Target:  5'- cGCCGG-UCuuCGUGAG-GUCcGUCCCc -3'
miRNA:   3'- -UGGCCgAGuuGCACUCgCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 60952 0.67 0.823246
Target:  5'- cGCCuGCUCGAC--GAGCGCCgggCCUa -3'
miRNA:   3'- -UGGcCGAGUUGcaCUCGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 135001 0.67 0.823246
Target:  5'- --gGGC-CGACGUGAccGUGCUugcgUGUCCCu -3'
miRNA:   3'- uggCCGaGUUGCACU--CGCGG----ACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 21406 0.67 0.823246
Target:  5'- cGCCGGCUCcACGaucucGAGC-CC-GUCCUc -3'
miRNA:   3'- -UGGCCGAGuUGCa----CUCGcGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 44431 0.67 0.814939
Target:  5'- -gCGGCUCGACGacaccgGcGCGCCcG-CCCg -3'
miRNA:   3'- ugGCCGAGUUGCa-----CuCGCGGaCaGGG- -5'
10892 5' -58.4 NC_002794.1 + 69415 0.67 0.814939
Target:  5'- cGCCGaGCcgCGACaGgcaGAGCGUCUG-CCCg -3'
miRNA:   3'- -UGGC-CGa-GUUG-Ca--CUCGCGGACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 118689 0.67 0.814939
Target:  5'- cGCCGGCggCAGCGcccagGAGCGCaugaUGgCCa -3'
miRNA:   3'- -UGGCCGa-GUUGCa----CUCGCGg---ACaGGg -5'
10892 5' -58.4 NC_002794.1 + 194339 0.67 0.8141
Target:  5'- cACgGGCUCuccGACGgGGGCGCCaGgaaccgcUCCCg -3'
miRNA:   3'- -UGgCCGAG---UUGCaCUCGCGGaC-------AGGG- -5'
10892 5' -58.4 NC_002794.1 + 55646 0.67 0.80988
Target:  5'- gGCCGGCaggcgcagccccgaCAugGUGcGCGCCUucugCCCg -3'
miRNA:   3'- -UGGCCGa-------------GUugCACuCGCGGAca--GGG- -5'
10892 5' -58.4 NC_002794.1 + 12216 0.67 0.797869
Target:  5'- uGCCGGCggcgUCGGCGgcgccgGcGGCGCC-GUCCg -3'
miRNA:   3'- -UGGCCG----AGUUGCa-----C-UCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 32651 0.67 0.797869
Target:  5'- gACCGGggCGACG---GCGCC-GUCCCc -3'
miRNA:   3'- -UGGCCgaGUUGCacuCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 150542 0.67 0.797869
Target:  5'- gGCCGGCgccauggccgucUCGGCGcugGAGCucaucaacGCCUG-CCCu -3'
miRNA:   3'- -UGGCCG------------AGUUGCa--CUCG--------CGGACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 38569 0.67 0.797869
Target:  5'- cGCCGGCgccUCGACG-GAGUcgGCCgccuccUCCCg -3'
miRNA:   3'- -UGGCCG---AGUUGCaCUCG--CGGac----AGGG- -5'
10892 5' -58.4 NC_002794.1 + 108960 0.67 0.797001
Target:  5'- gACCGucaucuuacggcaGCUgAGCGUGGcgaagcugcuGCGCCUcguGUCCCa -3'
miRNA:   3'- -UGGC-------------CGAgUUGCACU----------CGCGGA---CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 49269 0.68 0.789121
Target:  5'- gACgGGCgcucCAACGgcccGGGCGCCgccgccuccccGUCCCg -3'
miRNA:   3'- -UGgCCGa---GUUGCa---CUCGCGGa----------CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 13129 0.68 0.780242
Target:  5'- cGCgCGGCUCGcucGCGcGGGuCGUCgccGUCCCa -3'
miRNA:   3'- -UG-GCCGAGU---UGCaCUC-GCGGa--CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.