miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 12025 0.68 0.780242
Target:  5'- cGCCGGCccgGGCGUccGCGCCU-UCCCc -3'
miRNA:   3'- -UGGCCGag-UUGCAcuCGCGGAcAGGG- -5'
10892 5' -58.4 NC_002794.1 + 12216 0.67 0.797869
Target:  5'- uGCCGGCggcgUCGGCGgcgccgGcGGCGCC-GUCCg -3'
miRNA:   3'- -UGGCCG----AGUUGCa-----C-UCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 12998 0.66 0.854784
Target:  5'- uGCuCGuGCUCAGCcgacagGAacgcacGCGCCUGUUCCu -3'
miRNA:   3'- -UG-GC-CGAGUUGca----CU------CGCGGACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 13129 0.68 0.780242
Target:  5'- cGCgCGGCUCGcucGCGcGGGuCGUCgccGUCCCa -3'
miRNA:   3'- -UG-GCCGAGU---UGCaCUC-GCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 16339 0.69 0.724651
Target:  5'- gGCCGGCaccgaCGACGUcGGCGCCa--CCCg -3'
miRNA:   3'- -UGGCCGa----GUUGCAcUCGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 18978 1.12 0.001564
Target:  5'- gACCGGCUCAACGUGAGCGCCUGUCCCa -3'
miRNA:   3'- -UGGCCGAGUUGCACUCGCGGACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 21406 0.67 0.823246
Target:  5'- cGCCGGCUCcACGaucucGAGC-CC-GUCCUc -3'
miRNA:   3'- -UGGCCGAGuUGCa----CUCGcGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 22946 0.74 0.429324
Target:  5'- gGCUGGC-CGACGggccGGCGCCguUGUCCCc -3'
miRNA:   3'- -UGGCCGaGUUGCac--UCGCGG--ACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 23008 0.67 0.823246
Target:  5'- cGCCGG-UCuuCGUGAG-GUCcGUCCCc -3'
miRNA:   3'- -UGGCCgAGuuGCACUCgCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 26657 0.72 0.548564
Target:  5'- gGCCGGCUCGucgGCGgggugGAGCGCCa---CCg -3'
miRNA:   3'- -UGGCCGAGU---UGCa----CUCGCGGacagGG- -5'
10892 5' -58.4 NC_002794.1 + 31332 0.67 0.839366
Target:  5'- gUCGGCUCGGCGcc--CGCCgUGUCCg -3'
miRNA:   3'- uGGCCGAGUUGCacucGCGG-ACAGGg -5'
10892 5' -58.4 NC_002794.1 + 32651 0.67 0.797869
Target:  5'- gACCGGggCGACG---GCGCC-GUCCCc -3'
miRNA:   3'- -UGGCCgaGUUGCacuCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 34109 0.69 0.743567
Target:  5'- cCCGGaccgCGACGUccGCGaCCUGUUCCg -3'
miRNA:   3'- uGGCCga--GUUGCAcuCGC-GGACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 35064 0.72 0.567949
Target:  5'- gACCGccGCU--GCGUGGGCGCCcUGgugCCCg -3'
miRNA:   3'- -UGGC--CGAguUGCACUCGCGG-ACa--GGG- -5'
10892 5' -58.4 NC_002794.1 + 35782 0.69 0.724651
Target:  5'- cGCCGGCgucgucucCGGCGUGAcccuGCGCCcccgGaCCCg -3'
miRNA:   3'- -UGGCCGa-------GUUGCACU----CGCGGa---CaGGG- -5'
10892 5' -58.4 NC_002794.1 + 37915 0.66 0.883326
Target:  5'- cGCCGGcCUCAACGUcaacCGCCgcgGccgCCCg -3'
miRNA:   3'- -UGGCC-GAGUUGCAcuc-GCGGa--Ca--GGG- -5'
10892 5' -58.4 NC_002794.1 + 38569 0.67 0.797869
Target:  5'- cGCCGGCgccUCGACG-GAGUcgGCCgccuccUCCCg -3'
miRNA:   3'- -UGGCCG---AGUUGCaCUCG--CGGac----AGGG- -5'
10892 5' -58.4 NC_002794.1 + 44431 0.67 0.814939
Target:  5'- -gCGGCUCGACGacaccgGcGCGCCcG-CCCg -3'
miRNA:   3'- ugGCCGAGUUGCa-----CuCGCGGaCaGGG- -5'
10892 5' -58.4 NC_002794.1 + 45238 0.67 0.828964
Target:  5'- -gUGGCUCAACGUGAcguuggugacgacgGCGCgacaGUCCUu -3'
miRNA:   3'- ugGCCGAGUUGCACU--------------CGCGga--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 47742 0.66 0.869452
Target:  5'- cGCCGGgUCcACGUG-GCGgCCgugGUCgCg -3'
miRNA:   3'- -UGGCCgAGuUGCACuCGC-GGa--CAGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.