miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 48074 0.68 0.752892
Target:  5'- gGCCGGC-CAGCGgGAGCaGCCgccgCUCg -3'
miRNA:   3'- -UGGCCGaGUUGCaCUCG-CGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 49269 0.68 0.789121
Target:  5'- gACgGGCgcucCAACGgcccGGGCGCCgccgccuccccGUCCCg -3'
miRNA:   3'- -UGgCCGa---GUUGCa---CUCGCGGa----------CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 55646 0.67 0.80988
Target:  5'- gGCCGGCaggcgcagccccgaCAugGUGcGCGCCUucugCCCg -3'
miRNA:   3'- -UGGCCGa-------------GUugCACuCGCGGAca--GGG- -5'
10892 5' -58.4 NC_002794.1 + 60869 0.73 0.464498
Target:  5'- gGCCGGCUCucaaGUacaucGGCGCCgugGUCCCc -3'
miRNA:   3'- -UGGCCGAGuug-CAc----UCGCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 60952 0.67 0.823246
Target:  5'- cGCCuGCUCGAC--GAGCGCCgggCCUa -3'
miRNA:   3'- -UGGcCGAGUUGcaCUCGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 63630 0.66 0.883326
Target:  5'- uGCCGGCcgagcaccucgUCuGCGUGAcCGCCaacGUCUCg -3'
miRNA:   3'- -UGGCCG-----------AGuUGCACUcGCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 64482 0.69 0.695741
Target:  5'- cGCCGGCUUgAACGUGcAG-GCCgGcCCCu -3'
miRNA:   3'- -UGGCCGAG-UUGCAC-UCgCGGaCaGGG- -5'
10892 5' -58.4 NC_002794.1 + 65136 0.66 0.847166
Target:  5'- uCCGaGCUCcucGGCGacUGGGuCGCC-GUCCCg -3'
miRNA:   3'- uGGC-CGAG---UUGC--ACUC-GCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 68942 0.7 0.685995
Target:  5'- cGCgGGCcgCGGCGccGGCGCCUcUCCCu -3'
miRNA:   3'- -UGgCCGa-GUUGCacUCGCGGAcAGGG- -5'
10892 5' -58.4 NC_002794.1 + 69415 0.67 0.814939
Target:  5'- cGCCGaGCcgCGACaGgcaGAGCGUCUG-CCCg -3'
miRNA:   3'- -UGGC-CGa-GUUG-Ca--CUCGCGGACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 78801 0.68 0.752892
Target:  5'- uAUCGcGCgucaaCGACGUGAGgucgGCCUGUCCg -3'
miRNA:   3'- -UGGC-CGa----GUUGCACUCg---CGGACAGGg -5'
10892 5' -58.4 NC_002794.1 + 81428 0.68 0.771238
Target:  5'- cCCGGCUU--CGaGAccGCGCCUGUgCCg -3'
miRNA:   3'- uGGCCGAGuuGCaCU--CGCGGACAgGG- -5'
10892 5' -58.4 NC_002794.1 + 85063 0.66 0.869452
Target:  5'- gACCGGC-CAcgccGCGUcuGCGCCcccgGUCUCu -3'
miRNA:   3'- -UGGCCGaGU----UGCAcuCGCGGa---CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 90089 0.67 0.834601
Target:  5'- -gUGGCUCGGCacgcucugcgccgcgGUGGGCGCCgugaGUCUg -3'
miRNA:   3'- ugGCCGAGUUG---------------CACUCGCGGa---CAGGg -5'
10892 5' -58.4 NC_002794.1 + 90403 0.69 0.715077
Target:  5'- uCgGGCUgcACGUGAGCaucgGCC-GUCCCg -3'
miRNA:   3'- uGgCCGAguUGCACUCG----CGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 90470 0.7 0.656537
Target:  5'- gGCCGcGCgCGGCG-GGGcCGCC-GUCCCg -3'
miRNA:   3'- -UGGC-CGaGUUGCaCUC-GCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 91668 0.66 0.883326
Target:  5'- gUCGGCgc-ACGUGGGCGCgCUgGUCUUc -3'
miRNA:   3'- uGGCCGaguUGCACUCGCG-GA-CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 93057 0.7 0.656537
Target:  5'- uCCuGCUCuACGccuuccacGAGCGCCUGuUCCCg -3'
miRNA:   3'- uGGcCGAGuUGCa-------CUCGCGGAC-AGGG- -5'
10892 5' -58.4 NC_002794.1 + 100055 0.73 0.491838
Target:  5'- uACCGGCUCAGCGacacgcuggagcUG-GCGCCcGUCUUc -3'
miRNA:   3'- -UGGCCGAGUUGC------------ACuCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 101118 0.66 0.847166
Target:  5'- gGCC-GC-CGcCGUGGcGCGCCUGgCCCg -3'
miRNA:   3'- -UGGcCGaGUuGCACU-CGCGGACaGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.