miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 101248 0.68 0.780242
Target:  5'- uCCGGCgcgCAGCG-GGGgGCCgccCCCg -3'
miRNA:   3'- uGGCCGa--GUUGCaCUCgCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 101607 0.66 0.876491
Target:  5'- uGCCGGCcCGccggGCGgGGGUGCCguuucGUCCg -3'
miRNA:   3'- -UGGCCGaGU----UGCaCUCGCGGa----CAGGg -5'
10892 5' -58.4 NC_002794.1 + 101681 0.66 0.869452
Target:  5'- cGCCGGCggAGCGcGAGCccgaGCCggcgCCCg -3'
miRNA:   3'- -UGGCCGagUUGCaCUCG----CGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 106347 0.73 0.501116
Target:  5'- cGCCGGgUCGACGgcgggcGGGCGCCgGUUCg -3'
miRNA:   3'- -UGGCCgAGUUGCa-----CUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 108960 0.67 0.797001
Target:  5'- gACCGucaucuuacggcaGCUgAGCGUGGcgaagcugcuGCGCCUcguGUCCCa -3'
miRNA:   3'- -UGGC-------------CGAgUUGCACU----------CGCGGA---CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 113531 0.73 0.482639
Target:  5'- cGCCGGCUCGGCGU---CGCCgg-CCCg -3'
miRNA:   3'- -UGGCCGAGUUGCAcucGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 114747 0.66 0.876491
Target:  5'- aGCCGGCgccgccCGccGGCGCCgGUCCUc -3'
miRNA:   3'- -UGGCCGaguu--GCacUCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 115192 0.66 0.876491
Target:  5'- uGCCGGCggucgagcCGGCGU-AGCGCCUccgCCUu -3'
miRNA:   3'- -UGGCCGa-------GUUGCAcUCGCGGAca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 116698 0.66 0.847166
Target:  5'- aGCCGGCcuccagCAccGCGUcGAGCGUCUcgGUgCCg -3'
miRNA:   3'- -UGGCCGa-----GU--UGCA-CUCGCGGA--CAgGG- -5'
10892 5' -58.4 NC_002794.1 + 116802 0.73 0.491838
Target:  5'- aGCCGGCUCGggcgccguaGCGcGGGuCGCUcugGUCCCg -3'
miRNA:   3'- -UGGCCGAGU---------UGCaCUC-GCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 118653 0.69 0.73415
Target:  5'- gGCCaGCUCGucCGUGGGCGCgacgCCCg -3'
miRNA:   3'- -UGGcCGAGUu-GCACUCGCGgacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 118689 0.67 0.814939
Target:  5'- cGCCGGCggCAGCGcccagGAGCGCaugaUGgCCa -3'
miRNA:   3'- -UGGCCGa-GUUGCa----CUCGCGg---ACaGGg -5'
10892 5' -58.4 NC_002794.1 + 119555 0.66 0.867302
Target:  5'- cGCCGGC-C-ACGUgucccgGAGCGCCUugacuucgccgaacGUCCg -3'
miRNA:   3'- -UGGCCGaGuUGCA------CUCGCGGA--------------CAGGg -5'
10892 5' -58.4 NC_002794.1 + 122887 0.7 0.666385
Target:  5'- cGCCGaGCUCAACGagcgcacGGGCGCCgaGUUCg -3'
miRNA:   3'- -UGGC-CGAGUUGCa------CUCGCGGa-CAGGg -5'
10892 5' -58.4 NC_002794.1 + 123107 0.66 0.846394
Target:  5'- gACauGCUgAACGUgugcgucGAGCGCCacGUCCCc -3'
miRNA:   3'- -UGgcCGAgUUGCA-------CUCGCGGa-CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 123702 0.72 0.5476
Target:  5'- gACUGGCg-GGCGUGAGCGCgucguucuauccgCUGcCCCa -3'
miRNA:   3'- -UGGCCGagUUGCACUCGCG-------------GACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 124404 0.66 0.847166
Target:  5'- cGCCGG-UCGuCG-GGGCGCC-GUCCg -3'
miRNA:   3'- -UGGCCgAGUuGCaCUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 126357 0.73 0.478983
Target:  5'- cCCGGCUCcgauuucgccgcuGCGUGGGCGCCggggCCUg -3'
miRNA:   3'- uGGCCGAGu------------UGCACUCGCGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 126429 0.68 0.752892
Target:  5'- uGCUGG-UCGAggUGUGGGCGCCUcggCCCu -3'
miRNA:   3'- -UGGCCgAGUU--GCACUCGCGGAca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 126610 0.73 0.464498
Target:  5'- gGCCGGCgccgacgucgCGGCGUGAGCGCgaccgGgcgCCCg -3'
miRNA:   3'- -UGGCCGa---------GUUGCACUCGCGga---Ca--GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.