miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 194339 0.67 0.8141
Target:  5'- cACgGGCUCuccGACGgGGGCGCCaGgaaccgcUCCCg -3'
miRNA:   3'- -UGgCCGAG---UUGCaCUCGCGGaC-------AGGG- -5'
10892 5' -58.4 NC_002794.1 + 190747 0.69 0.695741
Target:  5'- cGCCGuCUCGACGgGGGCggcgGCCgcgcGUCCCg -3'
miRNA:   3'- -UGGCcGAGUUGCaCUCG----CGGa---CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 188795 0.67 0.83139
Target:  5'- gGCCGGCcCcGCc-GAGCGCC-GUCCa -3'
miRNA:   3'- -UGGCCGaGuUGcaCUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 187833 0.71 0.617039
Target:  5'- cGCuCGGCUCGGCGcgccGAGgGCuCUG-CCCa -3'
miRNA:   3'- -UG-GCCGAGUUGCa---CUCgCG-GACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 182037 0.71 0.606188
Target:  5'- cGCCGGCgacCAgaccagguccugcGCGUaGGGCGCCUGcgUCCg -3'
miRNA:   3'- -UGGCCGa--GU-------------UGCA-CUCGCGGACa-GGG- -5'
10892 5' -58.4 NC_002794.1 + 155908 0.77 0.305801
Target:  5'- gACCGGCUCGACGUGcggagccgGGUGCUUG-CCg -3'
miRNA:   3'- -UGGCCGAGUUGCAC--------UCGCGGACaGGg -5'
10892 5' -58.4 NC_002794.1 + 152143 0.69 0.743567
Target:  5'- aGCCGGUUCAACccgcuccAGCGCCUGcgggCCg -3'
miRNA:   3'- -UGGCCGAGUUGcac----UCGCGGACa---GGg -5'
10892 5' -58.4 NC_002794.1 + 151241 0.67 0.841725
Target:  5'- uACCGGCUCAcCGUcgugcucuucaacGAGCGCUgcgaaacguucgCCCu -3'
miRNA:   3'- -UGGCCGAGUuGCA-------------CUCGCGGaca---------GGG- -5'
10892 5' -58.4 NC_002794.1 + 150613 0.69 0.695741
Target:  5'- cGCCGGCUCuGCGgGAGCucgugaGCCaGuaUCCCg -3'
miRNA:   3'- -UGGCCGAGuUGCaCUCG------CGGaC--AGGG- -5'
10892 5' -58.4 NC_002794.1 + 150542 0.67 0.797869
Target:  5'- gGCCGGCgccauggccgucUCGGCGcugGAGCucaucaacGCCUG-CCCu -3'
miRNA:   3'- -UGGCCG------------AGUUGCa--CUCG--------CGGACaGGG- -5'
10892 5' -58.4 NC_002794.1 + 150480 0.67 0.830583
Target:  5'- uCUGGCUC-ACGUGcaccugcGGCGCCgccuccUCCCc -3'
miRNA:   3'- uGGCCGAGuUGCAC-------UCGCGGac----AGGG- -5'
10892 5' -58.4 NC_002794.1 + 147055 0.66 0.854784
Target:  5'- gGCCGGuCUaagGACGgagccgcGGGCGCCcgGUCCa -3'
miRNA:   3'- -UGGCC-GAg--UUGCa------CUCGCGGa-CAGGg -5'
10892 5' -58.4 NC_002794.1 + 145746 0.72 0.556295
Target:  5'- cGCCGGCaUCGACGgcgaccccgagcGAGCGCCacgcggagucGUCCCc -3'
miRNA:   3'- -UGGCCG-AGUUGCa-----------CUCGCGGa---------CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 145562 0.69 0.733204
Target:  5'- gACCGGUUC-GCGgacGAGCGCCgacgGagcggcggccggcUCCCg -3'
miRNA:   3'- -UGGCCGAGuUGCa--CUCGCGGa---C-------------AGGG- -5'
10892 5' -58.4 NC_002794.1 + 145316 0.68 0.762119
Target:  5'- aACCGGCgcgCGGCGggcGGCGCUcGggCCCg -3'
miRNA:   3'- -UGGCCGa--GUUGCac-UCGCGGaCa-GGG- -5'
10892 5' -58.4 NC_002794.1 + 143030 0.7 0.646672
Target:  5'- gGCCGGgUCGACGUGcAGgGCCg--CCa -3'
miRNA:   3'- -UGGCCgAGUUGCAC-UCgCGGacaGGg -5'
10892 5' -58.4 NC_002794.1 + 138730 0.71 0.587501
Target:  5'- aGCCGGCUCGACG-GGGUcCCcGgCCCu -3'
miRNA:   3'- -UGGCCGAGUUGCaCUCGcGGaCaGGG- -5'
10892 5' -58.4 NC_002794.1 + 135001 0.67 0.823246
Target:  5'- --gGGC-CGACGUGAccGUGCUugcgUGUCCCu -3'
miRNA:   3'- uggCCGaGUUGCACU--CGCGG----ACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 128530 0.68 0.771238
Target:  5'- uCUGGCUCugGACGgucggGuGCGCC-GUCCUg -3'
miRNA:   3'- uGGCCGAG--UUGCa----CuCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 128481 0.67 0.839366
Target:  5'- cACCGGgUC-GCGgaccGGGgGCC-GUCCCu -3'
miRNA:   3'- -UGGCCgAGuUGCa---CUCgCGGaCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.