Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10892 | 5' | -58.4 | NC_002794.1 | + | 18978 | 1.12 | 0.001564 |
Target: 5'- gACCGGCUCAACGUGAGCGCCUGUCCCa -3' miRNA: 3'- -UGGCCGAGUUGCACUCGCGGACAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 124404 | 0.66 | 0.847166 |
Target: 5'- cGCCGG-UCGuCG-GGGCGCC-GUCCg -3' miRNA: 3'- -UGGCCgAGUuGCaCUCGCGGaCAGGg -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 101118 | 0.66 | 0.847166 |
Target: 5'- gGCC-GC-CGcCGUGGcGCGCCUGgCCCg -3' miRNA: 3'- -UGGcCGaGUuGCACU-CGCGGACaGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 116698 | 0.66 | 0.847166 |
Target: 5'- aGCCGGCcuccagCAccGCGUcGAGCGUCUcgGUgCCg -3' miRNA: 3'- -UGGCCGa-----GU--UGCA-CUCGCGGA--CAgGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 65136 | 0.66 | 0.847166 |
Target: 5'- uCCGaGCUCcucGGCGacUGGGuCGCC-GUCCCg -3' miRNA: 3'- uGGC-CGAG---UUGC--ACUC-GCGGaCAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 123107 | 0.66 | 0.846394 |
Target: 5'- gACauGCUgAACGUgugcgucGAGCGCCacGUCCCc -3' miRNA: 3'- -UGgcCGAgUUGCA-------CUCGCGGa-CAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 151241 | 0.67 | 0.841725 |
Target: 5'- uACCGGCUCAcCGUcgugcucuucaacGAGCGCUgcgaaacguucgCCCu -3' miRNA: 3'- -UGGCCGAGUuGCA-------------CUCGCGGaca---------GGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 128481 | 0.67 | 0.839366 |
Target: 5'- cACCGGgUC-GCGgaccGGGgGCC-GUCCCu -3' miRNA: 3'- -UGGCCgAGuUGCa---CUCgCGGaCAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 31332 | 0.67 | 0.839366 |
Target: 5'- gUCGGCUCGGCGcc--CGCCgUGUCCg -3' miRNA: 3'- uGGCCGAGUUGCacucGCGG-ACAGGg -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 12998 | 0.66 | 0.854784 |
Target: 5'- uGCuCGuGCUCAGCcgacagGAacgcacGCGCCUGUUCCu -3' miRNA: 3'- -UG-GC-CGAGUUGca----CU------CGCGGACAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 147055 | 0.66 | 0.854784 |
Target: 5'- gGCCGGuCUaagGACGgagccgcGGGCGCCcgGUCCa -3' miRNA: 3'- -UGGCC-GAg--UUGCa------CUCGCGGa-CAGGg -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 119555 | 0.66 | 0.867302 |
Target: 5'- cGCCGGC-C-ACGUgucccgGAGCGCCUugacuucgccgaacGUCCg -3' miRNA: 3'- -UGGCCGaGuUGCA------CUCGCGGA--------------CAGGg -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 91668 | 0.66 | 0.883326 |
Target: 5'- gUCGGCgc-ACGUGGGCGCgCUgGUCUUc -3' miRNA: 3'- uGGCCGaguUGCACUCGCG-GA-CAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 114747 | 0.66 | 0.876491 |
Target: 5'- aGCCGGCgccgccCGccGGCGCCgGUCCUc -3' miRNA: 3'- -UGGCCGaguu--GCacUCGCGGaCAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 63630 | 0.66 | 0.883326 |
Target: 5'- uGCCGGCcgagcaccucgUCuGCGUGAcCGCCaacGUCUCg -3' miRNA: 3'- -UGGCCG-----------AGuUGCACUcGCGGa--CAGGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 115192 | 0.66 | 0.876491 |
Target: 5'- uGCCGGCggucgagcCGGCGU-AGCGCCUccgCCUu -3' miRNA: 3'- -UGGCCGa-------GUUGCAcUCGCGGAca-GGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 101681 | 0.66 | 0.869452 |
Target: 5'- cGCCGGCggAGCGcGAGCccgaGCCggcgCCCg -3' miRNA: 3'- -UGGCCGagUUGCaCUCG----CGGaca-GGG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 47742 | 0.66 | 0.869452 |
Target: 5'- cGCCGGgUCcACGUG-GCGgCCgugGUCgCg -3' miRNA: 3'- -UGGCCgAGuUGCACuCGC-GGa--CAGgG- -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 101607 | 0.66 | 0.876491 |
Target: 5'- uGCCGGCcCGccggGCGgGGGUGCCguuucGUCCg -3' miRNA: 3'- -UGGCCGaGU----UGCaCUCGCGGa----CAGGg -5' |
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10892 | 5' | -58.4 | NC_002794.1 | + | 85063 | 0.66 | 0.869452 |
Target: 5'- gACCGGC-CAcgccGCGUcuGCGCCcccgGUCUCu -3' miRNA: 3'- -UGGCCGaGU----UGCAcuCGCGGa---CAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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