miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10892 5' -58.4 NC_002794.1 + 101681 0.66 0.869452
Target:  5'- cGCCGGCggAGCGcGAGCccgaGCCggcgCCCg -3'
miRNA:   3'- -UGGCCGagUUGCaCUCG----CGGaca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 115192 0.66 0.876491
Target:  5'- uGCCGGCggucgagcCGGCGU-AGCGCCUccgCCUu -3'
miRNA:   3'- -UGGCCGa-------GUUGCAcUCGCGGAca-GGG- -5'
10892 5' -58.4 NC_002794.1 + 63630 0.66 0.883326
Target:  5'- uGCCGGCcgagcaccucgUCuGCGUGAcCGCCaacGUCUCg -3'
miRNA:   3'- -UGGCCG-----------AGuUGCACUcGCGGa--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 114747 0.66 0.876491
Target:  5'- aGCCGGCgccgccCGccGGCGCCgGUCCUc -3'
miRNA:   3'- -UGGCCGaguu--GCacUCGCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 91668 0.66 0.883326
Target:  5'- gUCGGCgc-ACGUGGGCGCgCUgGUCUUc -3'
miRNA:   3'- uGGCCGaguUGCACUCGCG-GA-CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 116698 0.66 0.847166
Target:  5'- aGCCGGCcuccagCAccGCGUcGAGCGUCUcgGUgCCg -3'
miRNA:   3'- -UGGCCGa-----GU--UGCA-CUCGCGGA--CAgGG- -5'
10892 5' -58.4 NC_002794.1 + 65136 0.66 0.847166
Target:  5'- uCCGaGCUCcucGGCGacUGGGuCGCC-GUCCCg -3'
miRNA:   3'- uGGC-CGAG---UUGC--ACUC-GCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 118689 0.67 0.814939
Target:  5'- cGCCGGCggCAGCGcccagGAGCGCaugaUGgCCa -3'
miRNA:   3'- -UGGCCGa-GUUGCa----CUCGCGg---ACaGGg -5'
10892 5' -58.4 NC_002794.1 + 21406 0.67 0.823246
Target:  5'- cGCCGGCUCcACGaucucGAGC-CC-GUCCUc -3'
miRNA:   3'- -UGGCCGAGuUGCa----CUCGcGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 45238 0.67 0.828964
Target:  5'- -gUGGCUCAACGUGAcguuggugacgacgGCGCgacaGUCCUu -3'
miRNA:   3'- ugGCCGAGUUGCACU--------------CGCGga--CAGGG- -5'
10892 5' -58.4 NC_002794.1 + 135001 0.67 0.823246
Target:  5'- --gGGC-CGACGUGAccGUGCUugcgUGUCCCu -3'
miRNA:   3'- uggCCGaGUUGCACU--CGCGG----ACAGGG- -5'
10892 5' -58.4 NC_002794.1 + 60952 0.67 0.823246
Target:  5'- cGCCuGCUCGAC--GAGCGCCgggCCUa -3'
miRNA:   3'- -UGGcCGAGUUGcaCUCGCGGacaGGG- -5'
10892 5' -58.4 NC_002794.1 + 23008 0.67 0.823246
Target:  5'- cGCCGG-UCuuCGUGAG-GUCcGUCCCc -3'
miRNA:   3'- -UGGCCgAGuuGCACUCgCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 150480 0.67 0.830583
Target:  5'- uCUGGCUC-ACGUGcaccugcGGCGCCgccuccUCCCc -3'
miRNA:   3'- uGGCCGAGuUGCAC-------UCGCGGac----AGGG- -5'
10892 5' -58.4 NC_002794.1 + 90089 0.67 0.834601
Target:  5'- -gUGGCUCGGCacgcucugcgccgcgGUGGGCGCCgugaGUCUg -3'
miRNA:   3'- ugGCCGAGUUG---------------CACUCGCGGa---CAGGg -5'
10892 5' -58.4 NC_002794.1 + 188795 0.67 0.83139
Target:  5'- gGCCGGCcCcGCc-GAGCGCC-GUCCa -3'
miRNA:   3'- -UGGCCGaGuUGcaCUCGCGGaCAGGg -5'
10892 5' -58.4 NC_002794.1 + 31332 0.67 0.839366
Target:  5'- gUCGGCUCGGCGcc--CGCCgUGUCCg -3'
miRNA:   3'- uGGCCGAGUUGCacucGCGG-ACAGGg -5'
10892 5' -58.4 NC_002794.1 + 128481 0.67 0.839366
Target:  5'- cACCGGgUC-GCGgaccGGGgGCC-GUCCCu -3'
miRNA:   3'- -UGGCCgAGuUGCa---CUCgCGGaCAGGG- -5'
10892 5' -58.4 NC_002794.1 + 151241 0.67 0.841725
Target:  5'- uACCGGCUCAcCGUcgugcucuucaacGAGCGCUgcgaaacguucgCCCu -3'
miRNA:   3'- -UGGCCGAGUuGCA-------------CUCGCGGaca---------GGG- -5'
10892 5' -58.4 NC_002794.1 + 123107 0.66 0.846394
Target:  5'- gACauGCUgAACGUgugcgucGAGCGCCacGUCCCc -3'
miRNA:   3'- -UGgcCGAgUUGCA-------CUCGCGGa-CAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.