miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 63522 0.66 0.947565
Target:  5'- cGCCUCCcgcgcgAGCCGCCUCgcUCAUccaacucCGCuACc -3'
miRNA:   3'- -CGGAGGa-----UUGGCGGAG--AGUGu------GCG-UG- -5'
10893 3' -55.9 NC_002794.1 + 52913 0.66 0.947565
Target:  5'- cGCCgucgCC--GCCGCCgucgCUCggccgGCACGCGa -3'
miRNA:   3'- -CGGa---GGauUGGCGGa---GAG-----UGUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 38715 0.66 0.947565
Target:  5'- cGCC-CC-GGCCGCCgaaauggggacCUCGCACGUggACg -3'
miRNA:   3'- -CGGaGGaUUGGCGGa----------GAGUGUGCG--UG- -5'
10893 3' -55.9 NC_002794.1 + 66296 0.66 0.947565
Target:  5'- cGCCcgUCCgu-CCGCC-CUCGCuuCGCGa -3'
miRNA:   3'- -CGG--AGGauuGGCGGaGAGUGu-GCGUg -5'
10893 3' -55.9 NC_002794.1 + 6566 0.66 0.944977
Target:  5'- gGCCaUCCUGaucauggaagaagucACCGCCgccaugCUCGCGgGC-Cg -3'
miRNA:   3'- -CGG-AGGAU---------------UGGCGGa-----GAGUGUgCGuG- -5'
10893 3' -55.9 NC_002794.1 + 42617 0.66 0.943205
Target:  5'- gGCuCUCUcgacGACCGCgCUCUCACA-GCGg -3'
miRNA:   3'- -CG-GAGGa---UUGGCG-GAGAGUGUgCGUg -5'
10893 3' -55.9 NC_002794.1 + 78118 0.66 0.943205
Target:  5'- cGCCUCCagacGCCGCC-CgagcCGCGaGCGCu -3'
miRNA:   3'- -CGGAGGau--UGGCGGaGa---GUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 63119 0.66 0.943205
Target:  5'- aCCUCCUcugcaacuACCGCUUCgccgacCGCGUGCACu -3'
miRNA:   3'- cGGAGGAu-------UGGCGGAGa-----GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194847 0.66 0.943205
Target:  5'- cGUCUCC-AGCCGCaccgUCUgccCGCGcCGCGCg -3'
miRNA:   3'- -CGGAGGaUUGGCGg---AGA---GUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 188591 0.66 0.943205
Target:  5'- cGCCgcUCCacGGCCGCCUUgCGC-CGCAg -3'
miRNA:   3'- -CGG--AGGa-UUGGCGGAGaGUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 18672 0.66 0.938615
Target:  5'- cGCUUCCUcggcuGCCGCCgccgUCUC-CG-GCACg -3'
miRNA:   3'- -CGGAGGAu----UGGCGG----AGAGuGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 14962 0.66 0.938615
Target:  5'- cGCCUCgaAGCCGCgUa--ACGCGaCGCg -3'
miRNA:   3'- -CGGAGgaUUGGCGgAgagUGUGC-GUG- -5'
10893 3' -55.9 NC_002794.1 + 73949 0.66 0.938615
Target:  5'- cGCUUCCUGGCCaGCuCUUUCG-ACGCc- -3'
miRNA:   3'- -CGGAGGAUUGG-CG-GAGAGUgUGCGug -5'
10893 3' -55.9 NC_002794.1 + 124419 0.66 0.938615
Target:  5'- cGCCgUCCgccGCgGUCUCUCuCcCGCGCg -3'
miRNA:   3'- -CGG-AGGau-UGgCGGAGAGuGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 93387 0.66 0.937193
Target:  5'- aCCUgCUGGCCGCCUCgcccaaguUCGCcuccguggccgaguACGUGCu -3'
miRNA:   3'- cGGAgGAUUGGCGGAG--------AGUG--------------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 39176 0.66 0.92874
Target:  5'- cCCgagCCUggUCGCCUU---CACGCACu -3'
miRNA:   3'- cGGa--GGAuuGGCGGAGaguGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 190254 0.66 0.92874
Target:  5'- aGCCcgaCU--CCGCUUCcagUCGCACGCGCc -3'
miRNA:   3'- -CGGag-GAuuGGCGGAG---AGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 187137 0.66 0.92874
Target:  5'- cGCC-CgUAGCCGCCcaggUACACgGCGCa -3'
miRNA:   3'- -CGGaGgAUUGGCGGaga-GUGUG-CGUG- -5'
10893 3' -55.9 NC_002794.1 + 114645 0.66 0.92874
Target:  5'- -gCUCg-AGCUGCCggugcugUUCGCGCGCGCg -3'
miRNA:   3'- cgGAGgaUUGGCGGa------GAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 79751 0.66 0.92874
Target:  5'- gGUCUCCU---CGCC-CUUuCGCGCACa -3'
miRNA:   3'- -CGGAGGAuugGCGGaGAGuGUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.