Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 194847 | 0.66 | 0.943205 |
Target: 5'- cGUCUCC-AGCCGCaccgUCUgccCGCGcCGCGCg -3' miRNA: 3'- -CGGAGGaUUGGCGg---AGA---GUGU-GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 63119 | 0.66 | 0.943205 |
Target: 5'- aCCUCCUcugcaacuACCGCUUCgccgacCGCGUGCACu -3' miRNA: 3'- cGGAGGAu-------UGGCGGAGa-----GUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 78118 | 0.66 | 0.943205 |
Target: 5'- cGCCUCCagacGCCGCC-CgagcCGCGaGCGCu -3' miRNA: 3'- -CGGAGGau--UGGCGGaGa---GUGUgCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 42617 | 0.66 | 0.943205 |
Target: 5'- gGCuCUCUcgacGACCGCgCUCUCACA-GCGg -3' miRNA: 3'- -CG-GAGGa---UUGGCG-GAGAGUGUgCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 124419 | 0.66 | 0.938615 |
Target: 5'- cGCCgUCCgccGCgGUCUCUCuCcCGCGCg -3' miRNA: 3'- -CGG-AGGau-UGgCGGAGAGuGuGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 73949 | 0.66 | 0.938615 |
Target: 5'- cGCUUCCUGGCCaGCuCUUUCG-ACGCc- -3' miRNA: 3'- -CGGAGGAUUGG-CG-GAGAGUgUGCGug -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 79325 | 0.67 | 0.905587 |
Target: 5'- gGCCUaCCUGagucaggGCCGCCcgaUCGCgGCGCAg -3' miRNA: 3'- -CGGA-GGAU-------UGGCGGag-AGUG-UGCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 38191 | 0.67 | 0.899986 |
Target: 5'- gGCgUUCCUGGucUCGUCgUUCGCGCGCGCg -3' miRNA: 3'- -CG-GAGGAUU--GGCGGaGAGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 79940 | 0.67 | 0.899986 |
Target: 5'- cGCCUCCUGGCCuaCUgcgagCUCgugGCGUACg -3' miRNA: 3'- -CGGAGGAUUGGcgGA-----GAGug-UGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 67343 | 0.67 | 0.893547 |
Target: 5'- uGCC-CCggcGCCGCC-C-CACGcCGCACa -3' miRNA: 3'- -CGGaGGau-UGGCGGaGaGUGU-GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 251 | 0.67 | 0.893547 |
Target: 5'- aCC-CCgGACUGCCgC-CGCGCGCGCg -3' miRNA: 3'- cGGaGGaUUGGCGGaGaGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 82780 | 0.67 | 0.893547 |
Target: 5'- cCCUCgCaaccGACCGCCgcgUC-CACGCGCGCc -3' miRNA: 3'- cGGAG-Ga---UUGGCGG---AGaGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 90259 | 0.67 | 0.906197 |
Target: 5'- gGUCUCCgcgcGAgUGgUUUUCGCGCGCGCg -3' miRNA: 3'- -CGGAGGa---UUgGCgGAGAGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 140374 | 0.67 | 0.91218 |
Target: 5'- aGCCuaUCCU---CGCCUCUCGCA-GCAg -3' miRNA: 3'- -CGG--AGGAuugGCGGAGAGUGUgCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 187923 | 0.67 | 0.91218 |
Target: 5'- gGCC-CCgccgcGACCGUCgcgUCACGCGUGCg -3' miRNA: 3'- -CGGaGGa----UUGGCGGag-AGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 193381 | 0.67 | 0.91218 |
Target: 5'- cGCgCUCCUcGCCGUCguccgcCUCGCGCuCGCc -3' miRNA: 3'- -CG-GAGGAuUGGCGGa-----GAGUGUGcGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 69140 | 0.67 | 0.91218 |
Target: 5'- cGCCggCCaAGCCGCUUCgcccacguUCACGCuCACg -3' miRNA: 3'- -CGGa-GGaUUGGCGGAG--------AGUGUGcGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 16939 | 0.67 | 0.91218 |
Target: 5'- cGCCgagCCgccACCGCCUC-CcCACGCc- -3' miRNA: 3'- -CGGa--GGau-UGGCGGAGaGuGUGCGug -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 640 | 0.67 | 0.917933 |
Target: 5'- cGCCUCCcguccCCGCCg--CGCA-GCGCg -3' miRNA: 3'- -CGGAGGauu--GGCGGagaGUGUgCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 195489 | 0.67 | 0.886886 |
Target: 5'- cGCCgcgcggCCUAaauaaGCCGCCcCggCACACGCcCa -3' miRNA: 3'- -CGGa-----GGAU-----UGGCGGaGa-GUGUGCGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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