Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 46736 | 0.69 | 0.817684 |
Target: 5'- aGCUUCCUGACCGaCUUC-CGC-CGCu- -3' miRNA: 3'- -CGGAGGAUUGGC-GGAGaGUGuGCGug -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 77194 | 0.69 | 0.834392 |
Target: 5'- uCCUCCUccGCCGCCcgUCGCAgGUGCg -3' miRNA: 3'- cGGAGGAu-UGGCGGagAGUGUgCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 35521 | 0.69 | 0.840878 |
Target: 5'- uGCCcagcgucuacaUCCUGcACCGCgagacccggcgCUCGCGCGCGCg -3' miRNA: 3'- -CGG-----------AGGAU-UGGCGga---------GAGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 91631 | 0.69 | 0.842481 |
Target: 5'- aCCUCCUGcGCCGCCUgUCcgagcugaagcuGCaccugucgGCGCACg -3' miRNA: 3'- cGGAGGAU-UGGCGGAgAG------------UG--------UGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 67225 | 0.69 | 0.834392 |
Target: 5'- cGCCgggcggCUAACCGCgUCUCGauucCGCGCa -3' miRNA: 3'- -CGGag----GAUUGGCGgAGAGUgu--GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 151338 | 0.69 | 0.834392 |
Target: 5'- uCCUCCgcGACCGCCUgcaaCUCGgcUugGCGCc -3' miRNA: 3'- cGGAGGa-UUGGCGGA----GAGU--GugCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 85075 | 0.69 | 0.817684 |
Target: 5'- cGCgUCUgcGCCcccgGUCUCUCAC-CGCACa -3' miRNA: 3'- -CGgAGGauUGG----CGGAGAGUGuGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 58449 | 0.7 | 0.754458 |
Target: 5'- cGCUgcgCCUGGCCGCg-CUgGCGCuGCACg -3' miRNA: 3'- -CGGa--GGAUUGGCGgaGAgUGUG-CGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 192359 | 0.7 | 0.754458 |
Target: 5'- gGCCUCCgccGCCGCCgaccgaGCGCGgGCu -3' miRNA: 3'- -CGGAGGau-UGGCGGagag--UGUGCgUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 17430 | 0.7 | 0.763875 |
Target: 5'- gGUCUCCgcGCCGCCggcgCUCGgGCcCGCg -3' miRNA: 3'- -CGGAGGauUGGCGGa---GAGUgUGcGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 187443 | 0.7 | 0.763875 |
Target: 5'- aGCCgcgCCgucuGCCGCCgCUCggcgucgcucgGCGCGCGCc -3' miRNA: 3'- -CGGa--GGau--UGGCGGaGAG-----------UGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 16681 | 0.7 | 0.763875 |
Target: 5'- cGCCUC--GGCCGCCaagUCUCGCuCGCGa -3' miRNA: 3'- -CGGAGgaUUGGCGG---AGAGUGuGCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 36534 | 0.7 | 0.776866 |
Target: 5'- cGCCUCCcaccaguGCCGCgaCUCcuccguccgcugcagACACGCGCc -3' miRNA: 3'- -CGGAGGau-----UGGCGgaGAG---------------UGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 123519 | 0.7 | 0.782359 |
Target: 5'- uGCCggCCUGcaGCUGgUUCgggCACACGCGCu -3' miRNA: 3'- -CGGa-GGAU--UGGCgGAGa--GUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 184539 | 0.7 | 0.782359 |
Target: 5'- cGCCgCCcaccGCCGCCUCUUcggacgccuCACGCGCc -3' miRNA: 3'- -CGGaGGau--UGGCGGAGAGu--------GUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 22040 | 0.7 | 0.791409 |
Target: 5'- aGUCUCCUAGCUGCCguUCUUgACAuuCGUGCa -3' miRNA: 3'- -CGGAGGAUUGGCGG--AGAG-UGU--GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 81784 | 0.7 | 0.78961 |
Target: 5'- gGCCgUCCgcgagauuuccGCUGCCUCagcCGCGCGCACc -3' miRNA: 3'- -CGG-AGGau---------UGGCGGAGa--GUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 62977 | 0.71 | 0.735316 |
Target: 5'- cGCUUCCUGaucACCGCCggcgcCUgGCAccccCGCACg -3' miRNA: 3'- -CGGAGGAU---UGGCGGa----GAgUGU----GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 194771 | 0.71 | 0.744935 |
Target: 5'- -gCUCCgagAACgGCCgg-CACGCGCGCa -3' miRNA: 3'- cgGAGGa--UUGgCGGagaGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 60671 | 0.71 | 0.741098 |
Target: 5'- cGCCgCC--GCCGCCUCcgucgacgggagcCGCGCGCACu -3' miRNA: 3'- -CGGaGGauUGGCGGAGa------------GUGUGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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