miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 18209 1.11 0.00253
Target:  5'- cGCCUCCUAACCGCCUCUCACACGCACu -3'
miRNA:   3'- -CGGAGGAUUGGCGGAGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 74865 0.85 0.133807
Target:  5'- -aCUCCUGGCCGCCUCUCcgcgaACGCACu -3'
miRNA:   3'- cgGAGGAUUGGCGGAGAGug---UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 190669 0.77 0.406895
Target:  5'- cGCCcgCCgcGCCGCCgggUCUC-CACGCACa -3'
miRNA:   3'- -CGGa-GGauUGGCGG---AGAGuGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 35729 0.76 0.450799
Target:  5'- gGCCUCCggcGGCCGCgCgUCUCACugGCu- -3'
miRNA:   3'- -CGGAGGa--UUGGCG-G-AGAGUGugCGug -5'
10893 3' -55.9 NC_002794.1 + 45937 0.76 0.43292
Target:  5'- cGCUUCCccgcccggUGACCGUCUCUCGgGCGCGu -3'
miRNA:   3'- -CGGAGG--------AUUGGCGGAGAGUgUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 186958 0.74 0.545583
Target:  5'- gGCCgcuggCC--GCCGCCUCcagcagCGCGCGCACc -3'
miRNA:   3'- -CGGa----GGauUGGCGGAGa-----GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 58715 0.74 0.526014
Target:  5'- cGCUUCCUGcACCGCgUCUCGCGCcucaGCGg -3'
miRNA:   3'- -CGGAGGAU-UGGCGgAGAGUGUG----CGUg -5'
10893 3' -55.9 NC_002794.1 + 100304 0.74 0.555456
Target:  5'- uGCCgCCU--CCGCCgCUgGCACGCGCg -3'
miRNA:   3'- -CGGaGGAuuGGCGGaGAgUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 92609 0.74 0.57535
Target:  5'- gGCCUUCUcGCCGCUg--CugGCGCACc -3'
miRNA:   3'- -CGGAGGAuUGGCGGagaGugUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 57569 0.73 0.58536
Target:  5'- cGCCaUCCUGGCCGaCUUCgagUCACAggcCGCGCg -3'
miRNA:   3'- -CGG-AGGAUUGGC-GGAG---AGUGU---GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 137657 0.73 0.58536
Target:  5'- gGCCUCCggcGCCGCUggugCGgACGCACg -3'
miRNA:   3'- -CGGAGGau-UGGCGGaga-GUgUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 19282 0.72 0.635763
Target:  5'- cGUCUCCUGGCCuggaGCCUCgUCGCGuCGCu- -3'
miRNA:   3'- -CGGAGGAUUGG----CGGAG-AGUGU-GCGug -5'
10893 3' -55.9 NC_002794.1 + 62790 0.72 0.635763
Target:  5'- cGCCUCCgGGCCccuaCCUCUCcgGCACGCcgGCg -3'
miRNA:   3'- -CGGAGGaUUGGc---GGAGAG--UGUGCG--UG- -5'
10893 3' -55.9 NC_002794.1 + 36154 0.72 0.66603
Target:  5'- uCCUCCgccGCCGCCUCcccccCACcCGCGCc -3'
miRNA:   3'- cGGAGGau-UGGCGGAGa----GUGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194486 0.71 0.715825
Target:  5'- uCCUCC-AGCCGCCcCUC-CGCGCcCg -3'
miRNA:   3'- cGGAGGaUUGGCGGaGAGuGUGCGuG- -5'
10893 3' -55.9 NC_002794.1 + 12986 0.71 0.719747
Target:  5'- uCCUCCUGGCCGUgCUCgugCucagccgacaggaacGCACGCGCc -3'
miRNA:   3'- cGGAGGAUUGGCG-GAGa--G---------------UGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60671 0.71 0.741098
Target:  5'- cGCCgCC--GCCGCCUCcgucgacgggagcCGCGCGCACu -3'
miRNA:   3'- -CGGaGGauUGGCGGAGa------------GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194771 0.71 0.744935
Target:  5'- -gCUCCgagAACgGCCgg-CACGCGCGCa -3'
miRNA:   3'- cgGAGGa--UUGgCGGagaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 21057 0.71 0.72561
Target:  5'- cGCCUCC---CC-CCUCUCACccuCGCGCc -3'
miRNA:   3'- -CGGAGGauuGGcGGAGAGUGu--GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 125902 0.71 0.715825
Target:  5'- gGCCguccucgCCUGGCCGCgaCUCACGCuGCuCg -3'
miRNA:   3'- -CGGa------GGAUUGGCGgaGAGUGUG-CGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.