Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 21057 | 0.71 | 0.72561 |
Target: 5'- cGCCUCC---CC-CCUCUCACccuCGCGCc -3' miRNA: 3'- -CGGAGGauuGGcGGAGAGUGu--GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 79032 | 0.71 | 0.732413 |
Target: 5'- cGCCUUCUGccggcccgGCCGCUcccgcgcucgcucuUCacUCGCACGCGCu -3' miRNA: 3'- -CGGAGGAU--------UGGCGG--------------AG--AGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 181608 | 0.71 | 0.696055 |
Target: 5'- cGCC-CCguuGCCGCaUCUCGCACGUg- -3' miRNA: 3'- -CGGaGGau-UGGCGgAGAGUGUGCGug -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 12986 | 0.71 | 0.719747 |
Target: 5'- uCCUCCUGGCCGUgCUCgugCucagccgacaggaacGCACGCGCc -3' miRNA: 3'- cGGAGGAUUGGCG-GAGa--G---------------UGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 194486 | 0.71 | 0.715825 |
Target: 5'- uCCUCC-AGCCGCCcCUC-CGCGCcCg -3' miRNA: 3'- cGGAGGaUUGGCGGaGAGuGUGCGuG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 36534 | 0.7 | 0.776866 |
Target: 5'- cGCCUCCcaccaguGCCGCgaCUCcuccguccgcugcagACACGCGCc -3' miRNA: 3'- -CGGAGGau-----UGGCGgaGAG---------------UGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 187443 | 0.7 | 0.763875 |
Target: 5'- aGCCgcgCCgucuGCCGCCgCUCggcgucgcucgGCGCGCGCc -3' miRNA: 3'- -CGGa--GGau--UGGCGGaGAG-----------UGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 192359 | 0.7 | 0.754458 |
Target: 5'- gGCCUCCgccGCCGCCgaccgaGCGCGgGCu -3' miRNA: 3'- -CGGAGGau-UGGCGGagag--UGUGCgUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 184539 | 0.7 | 0.782359 |
Target: 5'- cGCCgCCcaccGCCGCCUCUUcggacgccuCACGCGCc -3' miRNA: 3'- -CGGaGGau--UGGCGGAGAGu--------GUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 16681 | 0.7 | 0.763875 |
Target: 5'- cGCCUC--GGCCGCCaagUCUCGCuCGCGa -3' miRNA: 3'- -CGGAGgaUUGGCGG---AGAGUGuGCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 58449 | 0.7 | 0.754458 |
Target: 5'- cGCUgcgCCUGGCCGCg-CUgGCGCuGCACg -3' miRNA: 3'- -CGGa--GGAUUGGCGgaGAgUGUG-CGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 123519 | 0.7 | 0.782359 |
Target: 5'- uGCCggCCUGcaGCUGgUUCgggCACACGCGCu -3' miRNA: 3'- -CGGa-GGAU--UGGCgGAGa--GUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 81784 | 0.7 | 0.78961 |
Target: 5'- gGCCgUCCgcgagauuuccGCUGCCUCagcCGCGCGCACc -3' miRNA: 3'- -CGG-AGGau---------UGGCGGAGa--GUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 22040 | 0.7 | 0.791409 |
Target: 5'- aGUCUCCUAGCUGCCguUCUUgACAuuCGUGCa -3' miRNA: 3'- -CGGAGGAUUGGCGG--AGAG-UGU--GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 17430 | 0.7 | 0.763875 |
Target: 5'- gGUCUCCgcGCCGCCggcgCUCGgGCcCGCg -3' miRNA: 3'- -CGGAGGauUGGCGGa---GAGUgUGcGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 85075 | 0.69 | 0.817684 |
Target: 5'- cGCgUCUgcGCCcccgGUCUCUCAC-CGCACa -3' miRNA: 3'- -CGgAGGauUGG----CGGAGAGUGuGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 60936 | 0.69 | 0.806467 |
Target: 5'- gGCCaucggCCUGcACCGCCUgCUCGacgagcgccgggccUACGCGCg -3' miRNA: 3'- -CGGa----GGAU-UGGCGGA-GAGU--------------GUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 57210 | 0.69 | 0.817684 |
Target: 5'- aGCCaCCUGcACCGCCagagC-CugACGCGCg -3' miRNA: 3'- -CGGaGGAU-UGGCGGa---GaGugUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 113218 | 0.69 | 0.809079 |
Target: 5'- cGCCUCCUccgcccgggcGACCGCCguccaggaUCUCcCGCugcaGCGCg -3' miRNA: 3'- -CGGAGGA----------UUGGCGG--------AGAGuGUG----CGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 46736 | 0.69 | 0.817684 |
Target: 5'- aGCUUCCUGACCGaCUUC-CGC-CGCu- -3' miRNA: 3'- -CGGAGGAUUGGC-GGAGaGUGuGCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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