miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 85075 0.69 0.817684
Target:  5'- cGCgUCUgcGCCcccgGUCUCUCAC-CGCACa -3'
miRNA:   3'- -CGgAGGauUGG----CGGAGAGUGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194261 0.69 0.800318
Target:  5'- aGCUcgCCcgacGCCGCCUCgCACGgCGCGCg -3'
miRNA:   3'- -CGGa-GGau--UGGCGGAGaGUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60936 0.69 0.806467
Target:  5'- gGCCaucggCCUGcACCGCCUgCUCGacgagcgccgggccUACGCGCg -3'
miRNA:   3'- -CGGa----GGAU-UGGCGGA-GAGU--------------GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 57210 0.69 0.817684
Target:  5'- aGCCaCCUGcACCGCCagagC-CugACGCGCg -3'
miRNA:   3'- -CGGaGGAU-UGGCGGa---GaGugUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 113218 0.69 0.809079
Target:  5'- cGCCUCCUccgcccgggcGACCGCCguccaggaUCUCcCGCugcaGCGCg -3'
miRNA:   3'- -CGGAGGA----------UUGGCGG--------AGAGuGUG----CGUG- -5'
10893 3' -55.9 NC_002794.1 + 46736 0.69 0.817684
Target:  5'- aGCUUCCUGACCGaCUUC-CGC-CGCu- -3'
miRNA:   3'- -CGGAGGAUUGGC-GGAGaGUGuGCGug -5'
10893 3' -55.9 NC_002794.1 + 19900 0.69 0.800318
Target:  5'- uGCCgcgagcacgaCCUGAcCCGCCUgcagUACACGCGCa -3'
miRNA:   3'- -CGGa---------GGAUU-GGCGGAga--GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 144033 0.68 0.848033
Target:  5'- aGCCguaucuccggcgCCUGGCCGCCgucgacuUCUCGCcCGaCGCg -3'
miRNA:   3'- -CGGa-----------GGAUUGGCGG-------AGAGUGuGC-GUG- -5'
10893 3' -55.9 NC_002794.1 + 176475 0.68 0.850384
Target:  5'- cGCCgCCaGACCGUgucgguugguuCUCUCACGaGCACg -3'
miRNA:   3'- -CGGaGGaUUGGCG-----------GAGAGUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 125946 0.68 0.880006
Target:  5'- uCCUCgUGGCCGCCU---GCGCGCuCg -3'
miRNA:   3'- cGGAGgAUUGGCGGAgagUGUGCGuG- -5'
10893 3' -55.9 NC_002794.1 + 185326 0.68 0.850384
Target:  5'- cGCCUCCacacCCGCgUCgacCGCuCGCGCg -3'
miRNA:   3'- -CGGAGGauu-GGCGgAGa--GUGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 81637 0.68 0.852717
Target:  5'- aGCUUCCUGcgcaccgucgucugGCCGCCcaucgccgaacagCUCuuCGCGCACu -3'
miRNA:   3'- -CGGAGGAU--------------UGGCGGa------------GAGu-GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 195420 0.68 0.850384
Target:  5'- cGCgUCCcGAUCcgcacacggaGCCgCUCGCACGCACc -3'
miRNA:   3'- -CGgAGGaUUGG----------CGGaGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 105420 0.68 0.865605
Target:  5'- gGCCUCCagggUGGCCGCCgC-CGCGCcggcgGCGCc -3'
miRNA:   3'- -CGGAGG----AUUGGCGGaGaGUGUG-----CGUG- -5'
10893 3' -55.9 NC_002794.1 + 134974 0.68 0.858094
Target:  5'- uGCUUCCacGCCGCCUC-CugACGgAg -3'
miRNA:   3'- -CGGAGGauUGGCGGAGaGugUGCgUg -5'
10893 3' -55.9 NC_002794.1 + 45419 0.68 0.879306
Target:  5'- cGCCcCCgcACCGCCgcgagcgUCUCGCGgacccgguCGCGCg -3'
miRNA:   3'- -CGGaGGauUGGCGG-------AGAGUGU--------GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 58531 0.68 0.880006
Target:  5'- cGCCgaggCCU--UCGCCgcggCGCGCGCGCu -3'
miRNA:   3'- -CGGa---GGAuuGGCGGaga-GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 93753 0.68 0.880006
Target:  5'- uGCuCUUCgacGCCGaCCUCUUGCggACGCGCg -3'
miRNA:   3'- -CG-GAGGau-UGGC-GGAGAGUG--UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 16939 0.67 0.91218
Target:  5'- cGCCgagCCgccACCGCCUC-CcCACGCc- -3'
miRNA:   3'- -CGGa--GGau-UGGCGGAGaGuGUGCGug -5'
10893 3' -55.9 NC_002794.1 + 69140 0.67 0.91218
Target:  5'- cGCCggCCaAGCCGCUUCgcccacguUCACGCuCACg -3'
miRNA:   3'- -CGGa-GGaUUGGCGGAG--------AGUGUGcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.