miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 640 0.67 0.917933
Target:  5'- cGCCUCCcguccCCGCCg--CGCA-GCGCg -3'
miRNA:   3'- -CGGAGGauu--GGCGGagaGUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 16939 0.67 0.91218
Target:  5'- cGCCgagCCgccACCGCCUC-CcCACGCc- -3'
miRNA:   3'- -CGGa--GGau-UGGCGGAGaGuGUGCGug -5'
10893 3' -55.9 NC_002794.1 + 69140 0.67 0.91218
Target:  5'- cGCCggCCaAGCCGCUUCgcccacguUCACGCuCACg -3'
miRNA:   3'- -CGGa-GGaUUGGCGGAG--------AGUGUGcGUG- -5'
10893 3' -55.9 NC_002794.1 + 187923 0.67 0.91218
Target:  5'- gGCC-CCgccgcGACCGUCgcgUCACGCGUGCg -3'
miRNA:   3'- -CGGaGGa----UUGGCGGag-AGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 140374 0.67 0.91218
Target:  5'- aGCCuaUCCU---CGCCUCUCGCA-GCAg -3'
miRNA:   3'- -CGG--AGGAuugGCGGAGAGUGUgCGUg -5'
10893 3' -55.9 NC_002794.1 + 90259 0.67 0.906197
Target:  5'- gGUCUCCgcgcGAgUGgUUUUCGCGCGCGCg -3'
miRNA:   3'- -CGGAGGa---UUgGCgGAGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 79940 0.67 0.899986
Target:  5'- cGCCUCCUGGCCuaCUgcgagCUCgugGCGUACg -3'
miRNA:   3'- -CGGAGGAUUGGcgGA-----GAGug-UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 67343 0.67 0.893547
Target:  5'- uGCC-CCggcGCCGCC-C-CACGcCGCACa -3'
miRNA:   3'- -CGGaGGau-UGGCGGaGaGUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 251 0.67 0.893547
Target:  5'- aCC-CCgGACUGCCgC-CGCGCGCGCg -3'
miRNA:   3'- cGGaGGaUUGGCGGaGaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 82780 0.67 0.893547
Target:  5'- cCCUCgCaaccGACCGCCgcgUC-CACGCGCGCc -3'
miRNA:   3'- cGGAG-Ga---UUGGCGG---AGaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 62394 0.67 0.886886
Target:  5'- aCCUCCgacUGACCGCCUCggACcUGCGg -3'
miRNA:   3'- cGGAGG---AUUGGCGGAGagUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 192639 0.67 0.886886
Target:  5'- gGCCgcuccagCCgcGCCGCCgcgcgCUCGCGCG-ACu -3'
miRNA:   3'- -CGGa------GGauUGGCGGa----GAGUGUGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 79683 0.67 0.88416
Target:  5'- uGCUUCCUcgagcagcucgGGCCGCCgcucguguccuacaUCUCGCugcucgacuuuauGCGCACc -3'
miRNA:   3'- -CGGAGGA-----------UUGGCGG--------------AGAGUG-------------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 38191 0.67 0.899986
Target:  5'- gGCgUUCCUGGucUCGUCgUUCGCGCGCGCg -3'
miRNA:   3'- -CG-GAGGAUU--GGCGGaGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 193381 0.67 0.91218
Target:  5'- cGCgCUCCUcGCCGUCguccgcCUCGCGCuCGCc -3'
miRNA:   3'- -CG-GAGGAuUGGCGGa-----GAGUGUGcGUG- -5'
10893 3' -55.9 NC_002794.1 + 79325 0.67 0.905587
Target:  5'- gGCCUaCCUGagucaggGCCGCCcgaUCGCgGCGCAg -3'
miRNA:   3'- -CGGA-GGAU-------UGGCGGag-AGUG-UGCGUg -5'
10893 3' -55.9 NC_002794.1 + 194847 0.66 0.943205
Target:  5'- cGUCUCC-AGCCGCaccgUCUgccCGCGcCGCGCg -3'
miRNA:   3'- -CGGAGGaUUGGCGg---AGA---GUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 14962 0.66 0.938615
Target:  5'- cGCCUCgaAGCCGCgUa--ACGCGaCGCg -3'
miRNA:   3'- -CGGAGgaUUGGCGgAgagUGUGC-GUG- -5'
10893 3' -55.9 NC_002794.1 + 18672 0.66 0.938615
Target:  5'- cGCUUCCUcggcuGCCGCCgccgUCUC-CG-GCACg -3'
miRNA:   3'- -CGGAGGAu----UGGCGG----AGAGuGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 93387 0.66 0.937193
Target:  5'- aCCUgCUGGCCGCCUCgcccaaguUCGCcuccguggccgaguACGUGCu -3'
miRNA:   3'- cGGAgGAUUGGCGGAG--------AGUG--------------UGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.