Results 81 - 100 of 102 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 63119 | 0.66 | 0.943205 |
Target: 5'- aCCUCCUcugcaacuACCGCUUCgccgacCGCGUGCACu -3' miRNA: 3'- cGGAGGAu-------UGGCGGAGa-----GUGUGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 194847 | 0.66 | 0.943205 |
Target: 5'- cGUCUCC-AGCCGCaccgUCUgccCGCGcCGCGCg -3' miRNA: 3'- -CGGAGGaUUGGCGg---AGA---GUGU-GCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 66296 | 0.66 | 0.947565 |
Target: 5'- cGCCcgUCCgu-CCGCC-CUCGCuuCGCGa -3' miRNA: 3'- -CGG--AGGauuGGCGGaGAGUGu-GCGUg -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 6566 | 0.66 | 0.944977 |
Target: 5'- gGCCaUCCUGaucauggaagaagucACCGCCgccaugCUCGCGgGC-Cg -3' miRNA: 3'- -CGG-AGGAU---------------UGGCGGa-----GAGUGUgCGuG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 188591 | 0.66 | 0.943205 |
Target: 5'- cGCCgcUCCacGGCCGCCUUgCGC-CGCAg -3' miRNA: 3'- -CGG--AGGa-UUGGCGGAGaGUGuGCGUg -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 38715 | 0.66 | 0.947565 |
Target: 5'- cGCC-CC-GGCCGCCgaaauggggacCUCGCACGUggACg -3' miRNA: 3'- -CGGaGGaUUGGCGGa----------GAGUGUGCG--UG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 52913 | 0.66 | 0.947565 |
Target: 5'- cGCCgucgCC--GCCGCCgucgCUCggccgGCACGCGa -3' miRNA: 3'- -CGGa---GGauUGGCGGa---GAG-----UGUGCGUg -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 18672 | 0.66 | 0.938615 |
Target: 5'- cGCUUCCUcggcuGCCGCCgccgUCUC-CG-GCACg -3' miRNA: 3'- -CGGAGGAu----UGGCGG----AGAGuGUgCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 14962 | 0.66 | 0.938615 |
Target: 5'- cGCCUCgaAGCCGCgUa--ACGCGaCGCg -3' miRNA: 3'- -CGGAGgaUUGGCGgAgagUGUGC-GUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 93387 | 0.66 | 0.937193 |
Target: 5'- aCCUgCUGGCCGCCUCgcccaaguUCGCcuccguggccgaguACGUGCu -3' miRNA: 3'- cGGAgGAUUGGCGGAG--------AGUG--------------UGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 81070 | 0.66 | 0.923453 |
Target: 5'- cGCC-CgCUAACCGCCcaUCUCAaccgccugACGCAg -3' miRNA: 3'- -CGGaG-GAUUGGCGG--AGAGUg-------UGCGUg -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 82482 | 0.66 | 0.923453 |
Target: 5'- gGCCUCCgcgacGCgGCCcgC-CGCgACGCGCg -3' miRNA: 3'- -CGGAGGau---UGgCGGa-GaGUG-UGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 149704 | 0.66 | 0.923453 |
Target: 5'- gGCCgCCUGgcggguggGCCGCCUgcCUCGCuacgGCGUGCc -3' miRNA: 3'- -CGGaGGAU--------UGGCGGA--GAGUG----UGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 58818 | 0.66 | 0.923453 |
Target: 5'- cGCCcuUCCUcAACCGCCUgC-CGCGCGaggACg -3' miRNA: 3'- -CGG--AGGA-UUGGCGGA-GaGUGUGCg--UG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 79751 | 0.66 | 0.92874 |
Target: 5'- gGUCUCCU---CGCC-CUUuCGCGCACa -3' miRNA: 3'- -CGGAGGAuugGCGGaGAGuGUGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 153662 | 0.66 | 0.923453 |
Target: 5'- cGCgUCC-GGCCGCCgguugugaggCUCgACGCGCGa -3' miRNA: 3'- -CGgAGGaUUGGCGGa---------GAG-UGUGCGUg -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 114645 | 0.66 | 0.92874 |
Target: 5'- -gCUCg-AGCUGCCggugcugUUCGCGCGCGCg -3' miRNA: 3'- cgGAGgaUUGGCGGa------GAGUGUGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 187137 | 0.66 | 0.92874 |
Target: 5'- cGCC-CgUAGCCGCCcaggUACACgGCGCa -3' miRNA: 3'- -CGGaGgAUUGGCGGaga-GUGUG-CGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 190254 | 0.66 | 0.92874 |
Target: 5'- aGCCcgaCU--CCGCUUCcagUCGCACGCGCc -3' miRNA: 3'- -CGGag-GAuuGGCGGAG---AGUGUGCGUG- -5' |
|||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 39176 | 0.66 | 0.92874 |
Target: 5'- cCCgagCCUggUCGCCUU---CACGCACu -3' miRNA: 3'- cGGa--GGAuuGGCGGAGaguGUGCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home