miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 79032 0.71 0.732413
Target:  5'- cGCCUUCUGccggcccgGCCGCUcccgcgcucgcucuUCacUCGCACGCGCu -3'
miRNA:   3'- -CGGAGGAU--------UGGCGG--------------AG--AGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 62977 0.71 0.735316
Target:  5'- cGCUUCCUGaucACCGCCggcgcCUgGCAccccCGCACg -3'
miRNA:   3'- -CGGAGGAU---UGGCGGa----GAgUGU----GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60671 0.71 0.741098
Target:  5'- cGCCgCC--GCCGCCUCcgucgacgggagcCGCGCGCACu -3'
miRNA:   3'- -CGGaGGauUGGCGGAGa------------GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194771 0.71 0.744935
Target:  5'- -gCUCCgagAACgGCCgg-CACGCGCGCa -3'
miRNA:   3'- cgGAGGa--UUGgCGGagaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 48356 0.71 0.744935
Target:  5'- cGCCUgCUccgcGACCaGCCgC-CACACGCACu -3'
miRNA:   3'- -CGGAgGA----UUGG-CGGaGaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 192359 0.7 0.754458
Target:  5'- gGCCUCCgccGCCGCCgaccgaGCGCGgGCu -3'
miRNA:   3'- -CGGAGGau-UGGCGGagag--UGUGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 58449 0.7 0.754458
Target:  5'- cGCUgcgCCUGGCCGCg-CUgGCGCuGCACg -3'
miRNA:   3'- -CGGa--GGAUUGGCGgaGAgUGUG-CGUG- -5'
10893 3' -55.9 NC_002794.1 + 17430 0.7 0.763875
Target:  5'- gGUCUCCgcGCCGCCggcgCUCGgGCcCGCg -3'
miRNA:   3'- -CGGAGGauUGGCGGa---GAGUgUGcGUG- -5'
10893 3' -55.9 NC_002794.1 + 16681 0.7 0.763875
Target:  5'- cGCCUC--GGCCGCCaagUCUCGCuCGCGa -3'
miRNA:   3'- -CGGAGgaUUGGCGG---AGAGUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 187443 0.7 0.763875
Target:  5'- aGCCgcgCCgucuGCCGCCgCUCggcgucgcucgGCGCGCGCc -3'
miRNA:   3'- -CGGa--GGau--UGGCGGaGAG-----------UGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 36534 0.7 0.776866
Target:  5'- cGCCUCCcaccaguGCCGCgaCUCcuccguccgcugcagACACGCGCc -3'
miRNA:   3'- -CGGAGGau-----UGGCGgaGAG---------------UGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 184539 0.7 0.782359
Target:  5'- cGCCgCCcaccGCCGCCUCUUcggacgccuCACGCGCc -3'
miRNA:   3'- -CGGaGGau--UGGCGGAGAGu--------GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 123519 0.7 0.782359
Target:  5'- uGCCggCCUGcaGCUGgUUCgggCACACGCGCu -3'
miRNA:   3'- -CGGa-GGAU--UGGCgGAGa--GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 81784 0.7 0.78961
Target:  5'- gGCCgUCCgcgagauuuccGCUGCCUCagcCGCGCGCACc -3'
miRNA:   3'- -CGG-AGGau---------UGGCGGAGa--GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 22040 0.7 0.791409
Target:  5'- aGUCUCCUAGCUGCCguUCUUgACAuuCGUGCa -3'
miRNA:   3'- -CGGAGGAUUGGCGG--AGAG-UGU--GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194261 0.69 0.800318
Target:  5'- aGCUcgCCcgacGCCGCCUCgCACGgCGCGCg -3'
miRNA:   3'- -CGGa-GGau--UGGCGGAGaGUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 19900 0.69 0.800318
Target:  5'- uGCCgcgagcacgaCCUGAcCCGCCUgcagUACACGCGCa -3'
miRNA:   3'- -CGGa---------GGAUU-GGCGGAga--GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60936 0.69 0.806467
Target:  5'- gGCCaucggCCUGcACCGCCUgCUCGacgagcgccgggccUACGCGCg -3'
miRNA:   3'- -CGGa----GGAU-UGGCGGA-GAGU--------------GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 113218 0.69 0.809079
Target:  5'- cGCCUCCUccgcccgggcGACCGCCguccaggaUCUCcCGCugcaGCGCg -3'
miRNA:   3'- -CGGAGGA----------UUGGCGG--------AGAGuGUG----CGUG- -5'
10893 3' -55.9 NC_002794.1 + 46736 0.69 0.817684
Target:  5'- aGCUUCCUGACCGaCUUC-CGC-CGCu- -3'
miRNA:   3'- -CGGAGGAUUGGC-GGAGaGUGuGCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.